Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00692 ATGGTGGATTCGCCGGTGACGGAGCGTTTGAATGGTGCAAATGCTAATTTCCCCCGTCCTTCTCTTTCCTTCAAGCTTGAGATTCCTCCCGTTGATTCTTCACAGCAAACACCTCCCACAACTGTTGCTGCTCCGGCTCCTCCTGCTCCGGTTCCTCCTCCTCTGACATTTGACCCATCTCCCTCCTCCGACGCGGACCTCATTCACATCCCCAGCTACTCAAGATGGTTTTCTTGGAACAACATCCATGACTGCGAACTTCGCTTCCTTCCCGAGTTTTTCGATTCTCGCTGTTCTTCCAAGAATCCTAAGGTCTACAAGTACCTGAGGAATTCCATTGTCCAACGTTTCAGAGATAACCCGTCGTCCAAAATCACTTTCACCGATGTGCGAAAGACACTTGTCGGAGACGTGGGATCAATTCGAAGGGTTTTTGATTTTCTGGAGGCTTGGGGTTTGATAAATTACTCTCCTTCGACTCTTCACAAGCCCCTCAAGTGGGAGGACAAAGAAACGAAGTCTTCTTCCTCCGTTTCACACGGAGAGGCTGGGGCTGGCCCCCCTGATTCTTCTTCCGCTCCTAACAGAGAAGTGTCAAAAAGAGTTTGCAGTGGCTGCAAATCTAATTGCAGCATTGCCTGTTTTGCTTGTGACAAGTATGACCTGACTCTTTGTGCTCGGTGCTATGTCCGTGGAAACTATCGGGTCGGAGTCACTTCTTCAGATTTCCGGCGGGTTGAGATTAGTGAAGACATGAGAACAGATTGGACGGATAAAGAGACTTTGCATCTTCTTGAAGCCATTATGCATTTTGGAGATGATTGGAAGAAAATTGCCCAACATGTTGGTGGTAGAAGTGAAAAGGAATGTGTAACTCATTTTGTCAAGCTTCCTTTTGGGGAGCAGTTCATTAGTTATCCAGAATCTGTGGATAATGATAATAAACATATCTATTTGAAAGACCATGGAGATGCTAATTTTGGATCAGTTCATACAAGTACAATCTCTCCCAGTAAAAGAATTCGACTAACACCTCTTGCAGATGCAAGCAACCCCATTATGGCTCAGGCTGCATTTTTGTCTGCACTGGCTGGTGTTGAAGTTGCAGAAGCTTCTGCTCGGGCAGCCGTGGCGAACTTGTCGGAGATTGCAGATGTCGACGGAGCCACTGGATCTCATGTCATTATGGGAGATTATGGAGATGTAAAGTCGGAGGTGGATGTGGAAAGAGCAATCTCCGAGATTATCGACGTCCAGATGAAGGACATGCAAGATAGGCTGGACAGCTTTGAGGAATTAGATTTGCAGTTGGAAAAGGAGAGGCAGCAATTTGAACAAGTGAAAAACATTCTCTTTGCCGATCATCTCAACCTCATATTCAATAAAAGCTCCGATTCCACCGCAGAGGACAACATCGTAAGAATCGATTTGTAA 1434 46.16 MVDSPVTERLNGANANFPRPSLSFKLEIPPVDSSQQTPPTTVAAPAPPAPVPPPLTFDPSPSSDADLIHIPSYSRWFSWNNIHDCELRFLPEFFDSRCSSKNPKVYKYLRNSIVQRFRDNPSSKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYSPSTLHKPLKWEDKETKSSSSVSHGEAGAGPPDSSSAPNREVSKRVCSGCKSNCSIACFACDKYDLTLCARCYVRGNYRVGVTSSDFRRVEISEDMRTDWTDKETLHLLEAIMHFGDDWKKIAQHVGGRSEKECVTHFVKLPFGEQFISYPESVDNDNKHIYLKDHGDANFGSVHTSTISPSKRIRLTPLADASNPIMAQAAFLSALAGVEVAEASARAAVANLSEIADVDGATGSHVIMGDYGDVKSEVDVERAISEIIDVQMKDMQDRLDSFEELDLQLEKERQQFEQVKNILFADHLNLIFNKSSDSTAEDNIVRIDL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6348451 6351068 + Bma000901.1 Bma01g00692 75209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00692 477 Pfam SWIRM-associated region 1 405 459 IPR032451 -
Bma01g00692 477 Gene3D - 252 301 - -
Bma01g00692 477 Pfam Myb-like DNA-binding domain 254 297 IPR001005 -
Bma01g00692 477 ProSiteProfiles SWIRM domain profile. 68 165 IPR007526 GO:0005515
Bma01g00692 477 SUPERFAMILY Homeodomain-like 253 302 IPR009057 -
Bma01g00692 477 ProSiteProfiles Myb-like domain profile. 253 298 IPR001005 -
Bma01g00692 477 Pfam SWIRM domain 71 156 IPR007526 GO:0005515
Bma01g00692 477 SUPERFAMILY Homeodomain-like 66 169 IPR009057 -
Bma01g00692 477 MobiDBLite consensus disorder prediction 41 58 - -
Bma01g00692 477 SMART sant 252 300 IPR001005 -
Bma01g00692 477 CDD SANT 256 297 IPR001005 -
Bma01g00692 477 MobiDBLite consensus disorder prediction 1 58 - -
Bma01g00692 477 MobiDBLite consensus disorder prediction 173 196 - -
Bma01g00692 477 ProSiteProfiles SANT domain profile. 251 302 IPR017884 -
Bma01g00692 477 Gene3D - 74 159 IPR036388 -
Bma01g00692 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 290 IPR017930 -
Bma01g00692 477 Coils Coil 420 450 - -
Bma01g00692 477 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 35 470 - -
Bma01g00692 477 PANTHER SWI/SNF COMPLEX-RELATED 35 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00692 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - qsu:112010646 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00692 Bma-Chr1:6348451 Bma08g00266 Bma-Chr8:3586015 2.22E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00692 Bma_Chr01 FPKM 14.778351 17.570969 13.61628 14.127199 16.481585 16.392487 15.236569 33.72673 34.035206 40.977528