Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00697 AGCGAGAGCGATGTCGCAGTCGTTGCAGCTCTGGATGGGGAAATTTATTTGGTGCAAATTCATTCGAAAAAGGTTCTATGGTCGTTCTCATCAGGCCGCCCCATTTATTCTTCGTATCAGGCTTCTGTGCGTCATGACAGTGAGAAGAAGAATTCTTCTGACTCGAGTAGTGAGTTTTATGTCGACTGCGGTGAGGACTGGTCTCTCTACATGCATAGCAAACGCTATGGAAAAGTGAAACTGCCATTGAGTATTGAAGATTACATTCGGAACACTCCTTATGTATCTGACGATGGAGCTGTCACGTTGGGTTCAAAGAAGACCTGTGTTTTCATTCTTGACGCCAAATCCGGAAGATTAATCAATTCTCATACTCTGACTGATTTTCCTTCCACGTCAGGGTTAAAGAATGTGGAGGAAGATCCTGTTTTGTTGAATGAAGATGCAGAAGAATTTCTAGAGTCTAGCACTGAAGACTTAGAAGCAACTAAGTCGATGATTTACATCTTTAGAACAGATTATATGGTTCAGCATTATTCCCCAGACTCTGACAAAGTATTATGGAATGTGACCTTCTCTGAATTTGATGCTTCTTTTCGAATGCAGAACCTGAAGAAACCTTTTCTTACTTTTGGAAATGATCCTCCAGCCGAGTACCGTGGTGATATTGGGTTTCAAATTCCTCAGCAGACAAGGCCCATGATTTTCCGGATTCGCAATAACGGTCTGATGGAATCCTTTTCAATTCTCGATACACTTGCAAATGCGTATAAGGAAGGCTGGTCACTCCCTCTACCATCTAATTATCACCAGCAACCCCCTGCCTCTATCGATCAGTTTCTATTATCTTTACAATACAAAGAAGGCAAGAAAACGCTTGCATTGCCCTTTCCTGAAACAGAAAATTTTAGGGTATTGCCGATTCACAATGGAGAAACTGGTAAATTCAAAAACACTAGCATGGTTGCCGATATTGCAGCTGGGTATAGTATGCAGTCTTTTGTTCCATTTTTCCCTACAATTCTAGCCATTGGTGGCTTCATCTTTTATAAGTATTTTGGACGACTACTGTCTAGGTGGACTGATCAGACATCATACCTTAAAACACAAACTGGGATCTCGAAAAAGAAGAAAACTCGGAGGTCTGGAAATAATAAAAATGTTGCTAATAGTGACCAATCGCCAGTAACTATCAGCTCACGCAAAAATAAAATTGAATATGATAAGGCAAGTCTACAAAATGATGGAAGTGAAAAGAGATCCCCAATTTCCTTCAGCAGCCTCAGTGACGGCCTTATGGAAGGGCGAAGAATTGGTAAACTAATTGTTTCTAGCAAAGAAATTGCTTTGGGAAGCAATGGTACAAAGTGGGACGAAAAGATGGAAAATGCTTTTATCAATAACATCGGTAAGTACAGACGATACCGATACGACAGTGTCCGTGACTTACTACGCGTTATACGTAATAAGTTAAATCACTACCGAGAACTGCCTCAAGAAATCCAGGAGTTGTTAGGGCCAGTTCCCGAAGGATTCGAGAGTTATTTTACAAGCCGGTTTCCGAGGCTGCTTCTGGAGGTCTATCAAGTGATACTCAAATACTGCAGGGAGGAGGAATTTATGATTAAATACAGTAGCTATATAATGTAA 1650 40.91 SESDVAVVAALDGEIYLVQIHSKKVLWSFSSGRPIYSSYQASVRHDSEKKNSSDSSSEFYVDCGEDWSLYMHSKRYGKVKLPLSIEDYIRNTPYVSDDGAVTLGSKKTCVFILDAKSGRLINSHTLTDFPSTSGLKNVEEDPVLLNEDAEEFLESSTEDLEATKSMIYIFRTDYMVQHYSPDSDKVLWNVTFSEFDASFRMQNLKKPFLTFGNDPPAEYRGDIGFQIPQQTRPMIFRIRNNGLMESFSILDTLANAYKEGWSLPLPSNYHQQPPASIDQFLLSLQYKEGKKTLALPFPETENFRVLPIHNGETGKFKNTSMVADIAAGYSMQSFVPFFPTILAIGGFIFYKYFGRLLSRWTDQTSYLKTQTGISKKKKTRRSGNNKNVANSDQSPVTISSRKNKIEYDKASLQNDGSEKRSPISFSSLSDGLMEGRRIGKLIVSSKEIALGSNGTKWDEKMENAFINNIGKYRRYRYDSVRDLLRVIRNKLNHYRELPQEIQELLGPVPEGFESYFTSRFPRLLLEVYQVILKYCREEEFMIKYSSYIM 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6392328 6396079 + Bma000907.1 Bma01g00697 75214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00697 549 PANTHER IRE1-RELATED 455 546 IPR045133 GO:0004521|GO:0004674|GO:0030968
Bma01g00697 549 MobiDBLite consensus disorder prediction 371 400 - -
Bma01g00697 549 MobiDBLite consensus disorder prediction 384 400 - -
Bma01g00697 549 PANTHER SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B 455 546 - -
Bma01g00697 549 Gene3D - 1 208 IPR015943 GO:0005515
Bma01g00697 549 Pfam Ribonuclease 2-5A 452 544 IPR010513 GO:0004540|GO:0006397
Bma01g00697 549 ProSiteProfiles KEN domain profile. 406 547 IPR010513 GO:0004540|GO:0006397
Bma01g00697 549 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 191 IPR011047 -
Bma01g00697 549 SMART PGNneu 478 532 - -
Bma01g00697 549 PANTHER IRE1-RELATED 2 455 IPR045133 GO:0004521|GO:0004674|GO:0030968
Bma01g00697 549 PANTHER SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B 2 455 - -
Bma01g00697 549 Gene3D KEN domain 424 548 IPR038357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00697 K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1 [EC:2.7.11.1 3.1.26.-] - jre:109011489 374.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00697 Bma-Chr1:6392328 Bma15g00897 Bma-Chr15:30701844 1.23E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g69 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00740 . Bda01g01566 Bpe02g01760 . Bma01g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002039 1 4 2 2 2 2 3 2 2 3 1 2 2 2 2 2 2 3 2 4 2 1 2 3 1 1 1 2 1 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00697 Bma_Chr01 FPKM 7.474151 8.4356 13.625763 11.826306 8.301643 8.956282 7.64414 21.992804 22.32962 23.182814