Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00699 ATGGCTGAAAGTTGGGATGGAAGCGATGACCCCAGTAGCCAATCGGACGAGAGCATTTATGAAAGATTTCACGTCGAACCTATTTATGATGCATTTGTCTGCCCTTTGACGAAGCAAGTGATGCGTGATCCTGTTACTCTAGAAAATGGGCAAACTTTTGAACGAGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGATAGTGGAAAGAAGCTAGTCTGTCCATTGACTCTGAAAGAGCTGAGAAGCACTGATCTGAACCCTAGCATTGCTCTACGAAACACCATTGAAGAATGGATTGCCAGGAATGAATCTGCTAAGCTTGATGGGGCTCGTAGATCATTGAATCTGGCAAGCTCGGAAAGTGATATATTGCTATCGCTCAAATATGTTAAATACATCTGCCAGAAAAGTCGATCCAATAAGCATGTCACTCGTAATTCCGGGCTAATACCTATGATTATTGATTTGTTGAAAAGCAGCAGCAGAACTGTTCGCTGTAAAGCCCTGGAGACACTTTGTATTGTCGTGCAGGAAGATGATGATAACAAGGAAATATTTGTTGAGGGTGACACTGTACGCACTATAGTGAAGTTCTTGTGGCATGAACTTTCTCAAGAGAGGGAGGAAGCTGTCGCTTTGTTATATGAGCTCTCTAAGTCTGAAATCTTGTGCGAGAAGATAGGATCAATCAATGGTGCAATTTTCCTTTTGGTTCGAATGGCAAGCAGCAAATCGCAGAATCTCTTAACTGTTGAGAAGGCTGAAAAAACGCTGGAGAATTTGGCGAAGTTCGAGAATTATGTGAGACAGATGGCTGAGTACGGTAGACTACAACCTCTTCTAACTTGTATCCTTGAAGCCCCGCCAGAATTGAAACTCTCAATGGCGACCTTCTTGGGCGAACTGGCTCTAGATAATGATGTCAAGGTCCTTGTGGCTAAAACTGTTGGATCATCTTTGATCAATTTGATGAGAAGTGGTAACAAGCACTTAAGAGAAGCTGCTTTGAAAGCTCTAAACCCGATCTCCTCTTTTGAGAATAGTGCAAAAGTGTTGATAGAGGAAGGAATACTTCCACCCCTTGTGAGGGACCTTTTCACAGTTGGTGCCAACCAACTTCCTATGAGACTAAAAGAGGTCTCTGCAACAATACTTGCCAATGTCGTCAACTCCGGCTATGAGTTAGATTCCATTCCAGTAGGACCTGATCAGCAGACTACTCTTGTCTCGGAAGACATAGTCCATAATCTGCTACATCTCATTAGCAACACTGGTCCAGCTATTGCATGCAAGCTTCTCCAGGTTCTTGTCGGACTTACTAATTCTCCATCGACTGTTCTGAATGTTGTTTCTTCAATAAAAAGTTCAGGTGCGACCATCAGTTTAGTTCAGTTTATTGAGGCTCCACAGCATGATTTGCGCTTGGCTTCTGTAAAACTTCTCCACAACCTTTCCCTGCACATGGCTCACGACATAGCTGATGCCTTGCATAGCACAGCTAGCCAACTTGTGAGTCTGTTTAGAATCATGTCAGAAAATACTGGAATAATGGAAGAGCAAGCAGCTGCAGTTGGTCTCTTGGCTGAACTTCCGGAGAGGGATTTGGGGCTCAGCCGACAGATGCTTAATGAAGATACATTTACAATAGTCCACTCTAGAATAATGATGATTCAGCAAGGGGAGACTCGGGGGAGTCGCTTTGTTACACCATTTCTTGAAGGCTTAGTACGGATACTTGCAAGGATTACATTTATCTTGGCCGATGAGCCCGGTGCTATTGCATTTTGCCATAATCACAATATCGCTGCTTTGTTCATTGAATTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCTGCCGTAGCATTAGAGAACTTGTCGGCAGAATCCAAAAATTTGACACAAATCCAAGAGTTGCGCACACCCGGTTTTTGTGCCTCAGTTTTTCCATGTCTGGCCAAACCACCTGTAATGACAGGATTGTGTAGGCTCCATAAGGGTAAATGTTCTTTGAGAGAAAGCTTTTGCCTTTTGGAAGGACATGCAACTGACAAATTAGTCGCTCTTTTGGATCATAGAAACGAGAGGGTTGTCGAGGCAGCTCTTGCAGCAATTTCTACTTTGTTGGATGATGGGGTGGAAATTGAACAGGGCGTATTTGTGTTGTGGGATGTAGAAGGAGTGAAGCCTATACTCGATGTTTTAGTCGAAAAGCGTACAGAAAATCTACGGAGGAGAAGTGTTTGGGTGGTCGAAAGACTCTTGAGGACCGAGGAAATCGCGAAAGAAGTTTCCGGAAATCCAAACTTGAATACAGCTCTTGTGGATGCATACCAGCACGGTGACTTTCGAACCCGGCAAATCGCCGAGCGGGCCCTGAAACACGTGGATAAGCTACCAAACTTCTCCGGAATCTTTCCAAACATGGGATGA 2442 43.9 MAESWDGSDDPSSQSDESIYERFHVEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKDSGKKLVCPLTLKELRSTDLNPSIALRNTIEEWIARNESAKLDGARRSLNLASSESDILLSLKYVKYICQKSRSNKHVTRNSGLIPMIIDLLKSSSRTVRCKALETLCIVVQEDDDNKEIFVEGDTVRTIVKFLWHELSQEREEAVALLYELSKSEILCEKIGSINGAIFLLVRMASSKSQNLLTVEKAEKTLENLAKFENYVRQMAEYGRLQPLLTCILEAPPELKLSMATFLGELALDNDVKVLVAKTVGSSLINLMRSGNKHLREAALKALNPISSFENSAKVLIEEGILPPLVRDLFTVGANQLPMRLKEVSATILANVVNSGYELDSIPVGPDQQTTLVSEDIVHNLLHLISNTGPAIACKLLQVLVGLTNSPSTVLNVVSSIKSSGATISLVQFIEAPQHDLRLASVKLLHNLSLHMAHDIADALHSTASQLVSLFRIMSENTGIMEEQAAAVGLLAELPERDLGLSRQMLNEDTFTIVHSRIMMIQQGETRGSRFVTPFLEGLVRILARITFILADEPGAIAFCHNHNIAALFIELLQSNGLDNVQMVSAVALENLSAESKNLTQIQELRTPGFCASVFPCLAKPPVMTGLCRLHKGKCSLRESFCLLEGHATDKLVALLDHRNERVVEAALAAISTLLDDGVEIEQGVFVLWDVEGVKPILDVLVEKRTENLRRRSVWVVERLLRTEEIAKEVSGNPNLNTALVDAYQHGDFRTRQIAERALKHVDKLPNFSGIFPNMG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6399953 6403666 - Bma000909.1 Bma01g00699 75216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00699 813 SMART Ubox_2 31 99 IPR003613 GO:0004842|GO:0016567
Bma01g00699 813 ProSiteProfiles U-box domain profile. 27 106 IPR003613 GO:0004842|GO:0016567
Bma01g00699 813 SMART arm_5 180 220 IPR000225 GO:0005515
Bma01g00699 813 SMART arm_5 306 345 IPR000225 GO:0005515
Bma01g00699 813 SMART arm_5 346 391 IPR000225 GO:0005515
Bma01g00699 813 SMART arm_5 589 631 IPR000225 GO:0005515
Bma01g00699 813 SMART arm_5 672 713 IPR000225 GO:0005515
Bma01g00699 813 SMART arm_5 138 178 IPR000225 GO:0005515
Bma01g00699 813 SMART arm_5 265 305 IPR000225 GO:0005515
Bma01g00699 813 Gene3D - 105 312 IPR011989 -
Bma01g00699 813 SUPERFAMILY ARM repeat 458 801 IPR016024 -
Bma01g00699 813 SUPERFAMILY RING/U-box 22 106 - -
Bma01g00699 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 811 - -
Bma01g00699 813 Gene3D - 577 804 IPR011989 -
Bma01g00699 813 Gene3D - 313 551 IPR011989 -
Bma01g00699 813 CDD RING-Ubox_PUB 32 77 IPR045210 -
Bma01g00699 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 811 - -
Bma01g00699 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 104 IPR013083 -
Bma01g00699 813 SUPERFAMILY ARM repeat 118 366 IPR016024 -
Bma01g00699 813 Pfam U-box domain 30 104 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02413 Bma01g00699 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00699 Bma-Chr1:6399953 Bma11g00078 Bma-Chr11:883286 2.95E-92 dispersed
Bma02g01112 Bma-Chr2:52814772 Bma01g00699 Bma-Chr1:6399953 4.97E-71 transposed
Bma01g00699 Bma-Chr1:6399953 Bma01g02413 Bma-Chr1:81708023 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00699 - - zju:107419842 1235.71