Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00712 ATGGCAGATCAGTATTCAAATGAAGGTTCCAGTTCCAGCAATATTTCTCAGGAATGCTTGGATTCTACTGTTCAGCTTAATATCAAGACTTTAGATTCACGCATCTTCAGTTTTCAAGTGAACAAAAACATGCCAGTTCTATTTTTCAAGGAAAAAATAGCCAATGACATTGGTGTTCCTGTTGGTCAGCAAAGACTTATATTCAGAGGAAAGGTCTTAAAGGACGATCACCCTCTTTCAGAATATCACGTGGAAAATGGTCATACTTTGCATTTGGTTGAAAGGCAGCCCACCCAGTCGCAACTGCCATCCAATGTGAGTCCTGGTGAGACAAGTACAAATACTGTTAATAGAGGAAATGATTCTACTGAAGGCGCCCCACGTAATCTTATAGGACAAGTTTCACACAGTGTAGTTCTTGGTACGTTTAATGTGGGAGAACAAAGTGAAGGCATCGTCCCCGACCTTAGTAGGGTTGTTGGAGCAGTTTTGAATTCCATTGGTATTGGCAGTCAGGCTGCAACCAATAGTTCTGGTGGCCCACAGTTTGTTTTGCCAAATTATTATGGCCAAGCTAGTCAAGGTAACGAGGGAGGGACAAATGTGAATCTTAGGAATCTGAATCAAGGAGGAAATCAAACACAGCCTGGACAAACAGTACCGAATCGGCCATTAACATCGTTTCCCCAACTTGTGCAAATCCCCGTTGCTGCTGCAGCTGTACCAATTCCTTCTCTTGATGTGCCAATTCCTGATTCTTTAAATACACTATCTGTGTTCATGAACCGCTTGGAGAATGTACTATCTCGGAATGGTGGTAATCAGCTGAATTCATCTTCCAATAACGTGGGAGACTTACCAAGGGTAGAATTACCTTCCAATGCTCAGGGTTTGCGTACAGCGGAAGTATTGAGTGCTGTTTTGCGTCACGCACAACGGCTTTTGAGTGATCATGCCGTTTCTTCACTATCTCATATTGCAGGACGCCTGGAGCGAGAAGGGGCATCCCTTGATGCTAATACAAGGAGCCAAATCCAGACAGAATCAATGCAACTAGGGCTTGCTATGCAGCAACTGGGTGCACTTTTTCTTGAACTTGGTCGTGCAATTTTGACCTTGCGCATGGGGCAGTCACCTGAAGAATCTGTTGTGAATGCTGGACCTGCAGTTTACATTTCACCATCAGGCCCTAATCCTATAATGGTTCAGCCTTTCCCCCTTCAAACCAGCTCACTCTTTGGCGCTTCTATTCCTCCATCAAACCCTTTTAACCTTGGTCCTGTTGGTGTTGGAAATGTCCCTCGGCATATAAATATTCATATTCATGGTGGTGAGAATAAGTTCTTTTTTCTGGCCTATTTGCTCCAAATTGTTTCTACAGTTGGTACCAGACCAAACAATGCAGATGGCTTGTTGGGAGAACGCCAAAATGAAACAGGTTCTCTTGATTCTGGTGCACCACGGGAGTTACCTGTCAGAAATGTTATCTCATCTGCTGCACCTTATCACAGCTGTACCTCCACGTCTACTGGCATCACAGTCTCTACACCAACACAACCCGACCAAGGTGTTTCTATTTCTCTGCCACTTTCTGAATCTGTAATATCTTCTTCTGTCGTGACCGATTCAGGAACAAGTTTCATGGTTGATACTCAAGAAGATAGTATGGTTCGACTGGTGAGAGATCTCCCAAGTATCACAAGTAACAACAATGAGGCTGATATGTTGACATCGGAAGATGGTAGAAAGAAGGTACTTTTTCTAAATGATCTGAGCTCTTGCCATTCCCTTTCCACTGGCAATGAGACTATTGTCCTTCAAGATTCATCAACTTCCTCAACTGGAAGAACTGCAGGGAAGTCGGAAGATATCATGGAGAATATTGACCAGTCTGGAAAGCCTTCTGTGGCTGAAGGTGTTCAAGCTGTTCCACTTGGTTTGGGCCTGGGAGGCCTGGGACGAAGAAAGCCAGGAAGGCAGCTAAATATGCAAGAGAAAAGGAGTGTAATGGGTGCAACAAGTAGTGGTCTTAGCGATCAAAGTAAAAAACCAACAGCTGTGTCAACTGGACAACAAATTTTGCAATCCCTTGCATCCGGCAAGGCAACGGATAGGTCAAATGCTTCTAACTCCTCAGCAGCAAGATCACCATCTACTGTTAGTTCAGGCACGAATGGCAGACCGCTGCAAGGGGACGATTCTAATGGTCAAATTGATTTAACTAGTGCCATGTCTCGGGCGCTTCAGAATCCTGCTTTAAGTGGTTTCCTAACTGGTGTTTCAGACCAACTTGGTGCTGGTTCTCCTGATGTCTTGAGGAACATGTTGCAACAGGTCACACAGAGTCCCCAAATGAGAAATACTGTCAATGAAATAGCTCGACAGATTGACACCCAAGAAGTTGAGAGGATGTTTACTGGGATGGGGAGAGACCAAAGTGGCAGCCTTGATTTCCAAAAGATTTTCCAACAGATGATGCCAGTAGTTTCACGAGTCTTTAATAGAGGATCAACAGAAACGTTCCCGAGTATGGAAACTGATTTACAGCCAAATCATGACAGGTCACTCAACTCTGACAAACTTGGACGGAATTCTCAGGTTGACGTCCAGCCGGTAGTCCAGAGATTGAACACCGGAATACTCATCAATGGGCAATTTCCAGGACCCGATGTTCATTCTGCGACCAATGAAAATCTCAGTATTAACGTCCACAACAGTTTGGACGAACCATTCCTCATCTCTTGGAATGGAATTCAGATGAGGAGGAATTCGTTTGAAGATGGAGTGGGTGGAACAACATGCCCAATACCCCCTGGCAAAAACTTCACCTACATTTTCCAAGTGAAGGATCAGATTGGGAGCTTCTTCTATTTCCCTTCTCTTGCATTTCACAAAGCTGCTGGTGGTTTTGGTGGAATCAGGATCTTTACCCGCCCCCGAATTCCCCTTCCATTCCCGGACCCTGCCGGTGATTTCACCGTCCTCATTGGAGATTGGTACACGGCTAATCACACGAGTTTGAGAGAGAAATTGGATTGCGGAAAAAAGCTTCCATTTCCTGATGGCATTCTCATCAACGGCCGCTGCACCGGCGGCGCCTGGTTTATCGTGGAAAAAGGGAAAACTTATAGGCTGAGAATATCAAACGTGGGTTTGCAGAATTCCCTCAACTTCCGAATTCAAGGACACAAATTGACCCTCATTGAAGTAGAGGGAACCCATACAGTTCAAACCAGCTACTCTTCACTTGATGTTCATGTTGGCCAGTCTTGTTCTGTTCTTCTCACAGCCGACCAACCTTCTCGGGATTATTACATTGTTGTTAGCACTCGCTTCACCGCCCCGATTCTCACCTCCACTGCCACTCTCCGTTATGCCAACTCCGTCGGTCCGGTCCAAGGCCCACCTCCTGACGGCCCCACCGTCCAAATCGGCTTTTCCCTCAACCAAGCTCGCTCCATCAGGACTAATCTCACAGCTAGCGGACCAAGGCTGAACCCACAAGGCTCATACCATTACAGTCTCATTAACATAACTAAAACCATCGTCCTTACCAGCTCTGCTGGTCCGGTAAACGGAAAGCAAAGATATGCGGTTAATGGCGTATCACATGTCGCCCCCGACACCCCCCTCAAGGTCGCCGATTATTACAAAATCGACGGAGTCTTCCGTGTCGGAAGCATATCTGACAGACCCTACGATAATGAAATATACCTGGACACATCAGTTTTAGGTGTTGACTACAGAGCGTTTGTGGAGATTGTGTTCCAAAACAACGAAGATATGGTTCAGAGTTGGCATCTTGATGGATACAATTTCTTTGTCGTCGGAATGGATGGAGGGCAATGGACTGAGTCTAGACGAGATCATTACAATCTAAGAGATGCCATCAACCGTTGCACAACTCAAGTATATCCCAAGTCATGGACTGCCATATACGTGGCTCTAGATAACGTGGGGATGTGGAACTTGAGGTCCGAGTTTTGGGCTCGGCAGTACCTCGGCCAACAACTTTATCTGCGAGTTTATACGCCTTCAACTTCGTTGAGGGACGAGTTACCTATTCCAAAGAATGCTCTTCTCTGCGGCAGGGCAAGGGGTCGACGGACTCGCTAA 4116 45.82 MADQYSNEGSSSSNISQECLDSTVQLNIKTLDSRIFSFQVNKNMPVLFFKEKIANDIGVPVGQQRLIFRGKVLKDDHPLSEYHVENGHTLHLVERQPTQSQLPSNVSPGETSTNTVNRGNDSTEGAPRNLIGQVSHSVVLGTFNVGEQSEGIVPDLSRVVGAVLNSIGIGSQAATNSSGGPQFVLPNYYGQASQGNEGGTNVNLRNLNQGGNQTQPGQTVPNRPLTSFPQLVQIPVAAAAVPIPSLDVPIPDSLNTLSVFMNRLENVLSRNGGNQLNSSSNNVGDLPRVELPSNAQGLRTAEVLSAVLRHAQRLLSDHAVSSLSHIAGRLEREGASLDANTRSQIQTESMQLGLAMQQLGALFLELGRAILTLRMGQSPEESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGASIPPSNPFNLGPVGVGNVPRHINIHIHGGENKFFFLAYLLQIVSTVGTRPNNADGLLGERQNETGSLDSGAPRELPVRNVISSAAPYHSCTSTSTGITVSTPTQPDQGVSISLPLSESVISSSVVTDSGTSFMVDTQEDSMVRLVRDLPSITSNNNEADMLTSEDGRKKVLFLNDLSSCHSLSTGNETIVLQDSSTSSTGRTAGKSEDIMENIDQSGKPSVAEGVQAVPLGLGLGGLGRRKPGRQLNMQEKRSVMGATSSGLSDQSKKPTAVSTGQQILQSLASGKATDRSNASNSSAARSPSTVSSGTNGRPLQGDDSNGQIDLTSAMSRALQNPALSGFLTGVSDQLGAGSPDVLRNMLQQVTQSPQMRNTVNEIARQIDTQEVERMFTGMGRDQSGSLDFQKIFQQMMPVVSRVFNRGSTETFPSMETDLQPNHDRSLNSDKLGRNSQVDVQPVVQRLNTGILINGQFPGPDVHSATNENLSINVHNSLDEPFLISWNGIQMRRNSFEDGVGGTTCPIPPGKNFTYIFQVKDQIGSFFYFPSLAFHKAAGGFGGIRIFTRPRIPLPFPDPAGDFTVLIGDWYTANHTSLREKLDCGKKLPFPDGILINGRCTGGAWFIVEKGKTYRLRISNVGLQNSLNFRIQGHKLTLIEVEGTHTVQTSYSSLDVHVGQSCSVLLTADQPSRDYYIVVSTRFTAPILTSTATLRYANSVGPVQGPPPDGPTVQIGFSLNQARSIRTNLTASGPRLNPQGSYHYSLINITKTIVLTSSAGPVNGKQRYAVNGVSHVAPDTPLKVADYYKIDGVFRVGSISDRPYDNEIYLDTSVLGVDYRAFVEIVFQNNEDMVQSWHLDGYNFFVVGMDGGQWTESRRDHYNLRDAINRCTTQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQLYLRVYTPSTSLRDELPIPKNALLCGRARGRRTR 1371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6495166 6507855 + Bma000921.1 Bma01g00712 75229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00712 1371 SUPERFAMILY Cupredoxins 879 1005 IPR008972 -
Bma01g00712 1371 Gene3D - 989 1162 IPR008972 -
Bma01g00712 1371 Pfam Multicopper oxidase 871 977 IPR011707 GO:0005507
Bma01g00712 1371 Pfam Multicopper oxidase 991 1127 IPR001117 -
Bma01g00712 1371 Gene3D - 12 109 - -
Bma01g00712 1371 SUPERFAMILY Cupredoxins 1175 1364 IPR008972 -
Bma01g00712 1371 MobiDBLite consensus disorder prediction 666 738 - -
Bma01g00712 1371 Gene3D - 835 976 IPR008972 -
Bma01g00712 1371 CDD Ubl_ubiquitin_like 26 93 - -
Bma01g00712 1371 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 877 - -
Bma01g00712 1371 SUPERFAMILY Ubiquitin-like 12 97 IPR029071 -
Bma01g00712 1371 MobiDBLite consensus disorder prediction 469 488 - -
Bma01g00712 1371 MobiDBLite consensus disorder prediction 469 483 - -
Bma01g00712 1371 CDD CuRO_3_AAO_like_1 1207 1327 IPR034275 GO:0005507
Bma01g00712 1371 PRINTS Ubiquitin signature 76 97 IPR019956 -
Bma01g00712 1371 PRINTS Ubiquitin signature 55 75 IPR019956 -
Bma01g00712 1371 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Bma01g00712 1371 Pfam Multicopper oxidase 1209 1345 IPR011706 GO:0005507|GO:0016491
Bma01g00712 1371 SUPERFAMILY Cupredoxins 985 1162 IPR008972 -
Bma01g00712 1371 PANTHER OS07G0498800 PROTEIN 4 877 - -
Bma01g00712 1371 MobiDBLite consensus disorder prediction 96 128 - -
Bma01g00712 1371 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Bma01g00712 1371 MobiDBLite consensus disorder prediction 646 738 - -
Bma01g00712 1371 Gene3D - 1174 1368 IPR008972 -
Bma01g00712 1371 SMART ubq_7 24 95 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00712 - - - tcc:18591654 850.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02394 Bma01g00712 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00712 Bma-Chr1:6495166 Bma08g00730 Bma-Chr8:43149207 0 dispersed
Bma08g00719 Bma-Chr8:43038838 Bma01g00712 Bma-Chr1:6495166 2.38E-09 dispersed
Bma12g01160 Bma-Chr12:44143657 Bma01g00712 Bma-Chr1:6495166 1.59E-161 dispersed
Bma01g00282 Bma-Chr1:2374754 Bma01g00712 Bma-Chr1:6495166 5.17E-67 transposed
Bma01g00712 Bma-Chr1:6495166 Bma01g02394 Bma-Chr1:81534140 0 wgd
Bma01g00712 Bma-Chr1:6495166 Bma03g00624 Bma-Chr3:5148912 1.58E-30 wgd
Bma01g00712 Bma-Chr1:6495166 Bma05g00194 Bma-Chr5:5416461 3.45E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g137 Blo01g01619 . . . Bpe02g00325 . . Bma01g02394 Cmo05g00336 . Cma01g01997 Cma09g00072 Car01g01569 . . . . Bhi04g00090 . . . Hepe10g0675 . . Cla08g01388 Cam08g1861 Cec08g1440 Cco08g1572 Clacu08g1555 . Cre08g1339 . Cone7ag1919 Cone17ag1436 Cone20ag0046 Lsi04g01790 Csa04g02681 . Cme03g01548 Blo17g00723 Blo18g00757 Bda08g01183 . . Bpe05g00167 Bma01g00712 . Sed03g1664 Cmo01g02058 Cmo09g00073 . Cma05g00335 Car05g00279 . . . Bhi09g02935 Tan01g5072 . . Hepe01g2318 Mch11g0074 . Cla05g01582 Cam05g1690 Cec05g1693 Cco05g1740 Clacu05g1679 Cmu05g1570 Cre05g1687 Lsi08g01278 . Chy07g00372 Cme07g00076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00712 Bma_Chr01 FPKM 22.543369 24.655825 24.830782 23.431032 35.701244 34.963017 38.657406 24.888933 27.769958 24.519579