Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00723 ATGAGGAAGTGGACGATCCCTTCCGCTGTTCTACTACTATGCATTCTCTTCGTTCTCCCAGATCAAGGTCGGAGATTACACGTAAATGCGGAGGATCATTCGGAGGAGCTGGTAAATCCTCCAAAGATTGAAGATAAGATCGGAGCCGTTCCGAATGGCCTATCTACTGATTCTGATGTTGTCAGAAGGGAGGCGGAGTCAATCTCCAACAGATCTCTGCGCAGTAGCGCTGAGAAGTTTGAATTCCAAGCTGAGGTTTCGCGGCTCATGGACATAATAATCAACTCCCTTTATAGTAACAAGGACATTTTCCTAAGGGAGTTGATCTCTAACGCTTCAGATGCATTGGATAAAATTAGGTTTCTTTCCCTGACTGACAAAGAGATTTTGGGAGAAGGCGACAACACAAAGCTTGAGATCCAGATTAAGTTAGACAAAGAAAAGAAAATACTTTCTATTCGAGATAGAGGTATTGGTATGACAAAAGAGGATCTGATCAAGAACTTGGGAACCATAGCTAAATCTGGAACTTCAGCATTTGTGGAGAAAATGCAGACAAGTGGAGATCTCAATCTCATTGGGCAATTTGGAGTGGGGTTCTACTCAGTGTACCTTGTCGCTGACTACGTTGAAGTAATTAGCAAAAACAATGACGACAAACAGTATGTATGGGAATCAAAAGCTGATGGAGCATTTGCAATTTCGGAAGATACATGGAATGAACCCCTTGGGCGTGGAACTGAAGTCAGATTGCATCTCAGGGATGAAGCAGGAGAGTACTTGGAAGAGAGCAAATTAAAGGATTTAGTGAAAAGGTACTCTGAATTCATCAATTTTCCCATCTATATCTGGGGTAGCAAAGAGGTTGATGTGGAAGTTCCTGCCGATGAGGATGATTCTAGCGACGATGAACCATCTGAAAGCAGTACAACTGAAGAAGGGGAAGATGATTCAGAAAAACCAGAAGATGATGATGAGTCTGAGAAAAAACCAAAGACAAAGAAGGTTAAAGAAACAACCTACGAATGGGAGCTTTTAAACAATGTAAAAGCTATATGGCTTCGTAATCCAAAGGAGGTGACGGAGGAAGAGTACACTAAATTTTACCATTCACTTGCGAAGGATTTCAGTGATGAGAAACCTTTATCCTGGAGTCACTTTACTGCTGAAGGTGATGTTGAGTTCAAGGCGGTCTTGTTTGTTCCTCCAAAGGCTCCTCAGGATCTATACGAGAGTTATTATAACTCAAAAAAATCCAACTTGAAATTATATGTTAGACGTGTTTTCATATCAGATGAATTCGATGAGCTTTTGCCAAAGTATTTGAACTTTTTACAGGGCCTTGTTGATTCTGACACTTTACCCCTCAATGTATCACGAGAAATGCTTCAACAGCACAGCAGTTTGAAAACAATTAAGAAAAAACTCATTCGCAAGGCTCTTGATATGATTCGTAGAATTGCTGATGAGGATCCTGATGAATCCAATGACAAGGAGAAGAAAGAAACTGAGAAATCTAGTGATGAGAATGAGAAGAAAGGACAATACACCAAATTCTGGAATGAGTTTGGAAAGTCTATCAAGCTTGGTATTATTGAGGATGCAACCAACAGAAACCGTTTGGCAAAATTGCTTAGATTTGAGAGTTCCAAGTCCGATGGGAAATTGACTTCCCTGGATCAATACATCTCGAGGATGAAAGCTGGACAAAAGGATATCTTTTACATAACAGGAACCAGCAAGGAACAACTGGAAAAATCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTATGAGGTTATATTTTTCACAGATCCAGTTGATGAGTACCTGATGCAGTATCTTATGGATTATGAAGACAAGAAATTCCAAAACGTTTCAAAGGAAGGTCTTAAACTTGGGAAGGATTCGAAGGATAAGGAGTTGAAGGAGTCGTACAAGGAGCTCACTAAATGGTGGAAGAGTTCTCTTGCCAGTGACAATGTGGATGATGTGAAAATTTCTAACCGGTTAGCTAACACACCTTGTGTGGTTGTGACATCTAAATATGGATGGAGTGCAAACATGGAGAGAATCATGCAGTCTCAAACTTTATCTGACGCGAATAAACAAGCATATATGCGAGGAAAAAGGGTTCTAGAGATCAACCCTAGACACCCCATCATCAAGGAACTCCGTGACAGGGTAGCACAGGATTCTGAGGACGAGAACGTGAAGCAGACAGCGCAGCTCATGTATCAAACAGCGCTGATGGAGAGTGGATTCACTCTAACTGATCCAAAAGATTTTGCCACCCGCATTTACGACACAGTGAAGTCAAGCTTAAACATCAGCCCTGATGCATCCATTGATGAAGAAGAAGAGGTTGAAGAGACCGAGACCGAGACAGAGGCCGATGGAGGTAACAAGCCTGAAGCTGACATCAAACAAGATGTGGATGCGGAGGACCCTTCTGAACTGAAGGACGAGCTGTAG 2475 41.66 MRKWTIPSAVLLLCILFVLPDQGRRLHVNAEDHSEELVNPPKIEDKIGAVPNGLSTDSDVVRREAESISNRSLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKNNDDKQYVWESKADGAFAISEDTWNEPLGRGTEVRLHLRDEAGEYLEESKLKDLVKRYSEFINFPIYIWGSKEVDVEVPADEDDSSDDEPSESSTTEEGEDDSEKPEDDDESEKKPKTKKVKETTYEWELLNNVKAIWLRNPKEVTEEEYTKFYHSLAKDFSDEKPLSWSHFTAEGDVEFKAVLFVPPKAPQDLYESYYNSKKSNLKLYVRRVFISDEFDELLPKYLNFLQGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRRIADEDPDESNDKEKKETEKSSDENEKKGQYTKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESSKSDGKLTSLDQYISRMKAGQKDIFYITGTSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESYKELTKWWKSSLASDNVDDVKISNRLANTPCVVVTSKYGWSANMERIMQSQTLSDANKQAYMRGKRVLEINPRHPIIKELRDRVAQDSEDENVKQTAQLMYQTALMESGFTLTDPKDFATRIYDTVKSSLNISPDASIDEEEEVEETETETEADGGNKPEADIKQDVDAEDPSELKDEL 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6604716 6610669 + Bma000932.1 Bma01g00723 75240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Bma01g00723 824 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Bma01g00723 824 PANTHER BNAA08G14800D PROTEIN 19 802 - -
Bma01g00723 824 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Bma01g00723 824 Gene3D - 542 629 - -
Bma01g00723 824 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Bma01g00723 824 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 19 802 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00723 824 MobiDBLite consensus disorder prediction 796 824 - -
Bma01g00723 824 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Bma01g00723 824 MobiDBLite consensus disorder prediction 781 795 - -
Bma01g00723 824 MobiDBLite consensus disorder prediction 293 323 - -
Bma01g00723 824 SUPERFAMILY HSP90 C-terminal domain 648 771 IPR037196 -
Bma01g00723 824 MobiDBLite consensus disorder prediction 293 334 - -
Bma01g00723 824 Gene3D - 66 299 IPR036890 -
Bma01g00723 824 SUPERFAMILY Ribosomal protein S5 domain 2-like 349 629 IPR020568 -
Bma01g00723 824 SMART HKATPase_4 100 257 IPR003594 -
Bma01g00723 824 CDD HATPase_Hsp90-like 87 277 - -
Bma01g00723 824 Hamap Chaperone protein HtpG [htpG]. 75 772 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00723 824 Pfam Hsp90 protein 259 798 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00723 824 PIRSF HSP90_HTPG 52 815 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00723 824 MobiDBLite consensus disorder prediction 488 512 - -
Bma01g00723 824 Gene3D - 636 782 IPR037196 -
Bma01g00723 824 MobiDBLite consensus disorder prediction 775 824 - -
Bma01g00723 824 Gene3D - 348 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00723 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - jre:109003886 1337.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00723 Bma-Chr1:6604716 Bma08g00293 Bma-Chr8:4009881 0 dispersed
Bma01g00723 Bma-Chr1:6604716 Bma13g00489 Bma-Chr13:9172593 3.62E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00723 Bma_Chr01 FPKM 74.867203 78.157143 42.433773 45.946957 14.276855 12.661992 12.5736 18.598013 18.549116 20.296297