Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00729 ATGGATCAGCGCCGTGTTTCCATAGAATCGAGATTTAGACGTGTTTGTGTTTTCTGCGGTAGCAGCCCGGGCAAAAATCCTAGCTACCAACTTTCTGCAACTCAACTTGGCCAGCAACTGGTCGAACGGAATATTGACTTGGTTTATGGAGGTGGAAGTATTGGCTTGATGGGTTTAGTCTCTCACGCTGTCTATGATGGTGGTCGCCATGTGTTGGGAGTGATTCCCAGAACACTAATGCCAAGAGAGATAACAGGAGAGCCTGTGGGAGAAGTGAGAGCTGTATCGGGTATGCACCAACGCAAAGCCGAGATGGCTCGTCAAGCTGATGCATTTATTGCGCTGCCGGGTGGGTATGGCACCTTGGAAGAGCTCTTGGAAGTAATCACCTGGGCTCAGCTGGGAATCCACGATAAACCGGTGGGTCTGCTAAATGTTGATGGCTACTACGACTCACTCCTATCATTCATTGACAAAGCTGTTGACGAAGGTTTCATAACTCCAGCTGCCCGTAACATTATTGTGTCTGCCCAAACTGCCCAGGAACTCATGTCTAAGCTCGAGGAATATAGTCCTAATGAATCTGAGATCACCCCTAAGCTGAGGTGGGAAATGGAGCAGCATATGGGTTTCGCTGCAAAGTCAGAGATAGCTCGTTGA 660 48.79 MDQRRVSIESRFRRVCVFCGSSPGKNPSYQLSATQLGQQLVERNIDLVYGGGSIGLMGLVSHAVYDGGRHVLGVIPRTLMPREITGEPVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYDSLLSFIDKAVDEGFITPAARNIIVSAQTAQELMSKLEEYSPNESEITPKLRWEMEQHMGFAAKSEIAR 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6668243 6669811 - Bma000940.1 Bma01g00729 75246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00729 219 Gene3D - 2 189 - -
Bma01g00729 219 Pfam Possible lysine decarboxylase 57 186 IPR031100 -
Bma01g00729 219 SUPERFAMILY MCP/YpsA-like 11 190 - -
Bma01g00729 219 PANTHER LOG FAMILY PROTEIN YJL055W 6 216 - -
Bma01g00729 219 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 6 216 - -
Bma01g00729 219 TIGRFAM TIGR00730: TIGR00730 family protein 14 190 IPR005269 GO:0009691|GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00729 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - tcc:18591534 386.341
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00729 Bma04g00428 CCT
Bma01g02581 Bma01g00729 CCT
Bma01g00729 Bma04g00242 CCT
Bma01g02363 Bma01g00729 CCT
Bma01g00729 Bma04g00428 ECH
Bma01g02581 Bma01g00729 ECH
Bma01g00729 Bma01g02581 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00729 Bma-Chr1:6668243 Bma11g00179 Bma-Chr11:1610589 3.25E-119 dispersed
Bma01g00729 Bma-Chr1:6668243 Bma01g02363 Bma-Chr1:81321365 2.01E-132 wgd
Bma01g00729 Bma-Chr1:6668243 Bma04g00242 Bma-Chr4:2091144 3.96E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g529 . Blo12g00735 . Bda03g00452 Bpe02g00143 Bpe04g00415 Bma04g00428 Bma01g02581 . . Cma01g01473 Cma09g00596 . . . Cpe06g00457 . . . . . . . . . . . . . . . Cone4ag1290 Cone7ag0865 . . Lsi04g02284 Csa03g04499 Chy04g00201 . . . Bda11g00804 . . . Bma01g00729 . . Cmo01g01529 Cmo09g00582 . . . Car09g00527 . Cpe02g00479 Bhi09g02506 . . . Hepe01g2175 Mch11g0714 . Cla11g01429 . . . . . . . . . Cme04g00232
Vvi18g1089 Blo01g01592 . Bda01g00492 . Bpe02g00355 Bpe04g00242 Bma04g00242 Bma01g02363 Cmo05g00301 Cmo12g00365 Cma01g01966 . Car01g01536 Car12g00392 . . Cpe07g00372 Bhi04g00161 . . . Hepe10g0139 . . Cla08g01434 Cam08g1913 Cec08g1489 Cco08g1626 Clacu08g1604 . Cre08g1389 . . Cone17ag1395 . Lsi04g01732 Csa03g04269 Chy04g00426 Cme03g01892 . Blo18g00781 . Bda01g01529 Bpe02g01725 . Bma01g00729 . . Cmo01g02024 . Cma12g00414 Cma05g00298 Car05g00246 . Cpe11g00247 . Bhi09g02098 Tan01g5006 Cmetu04g2830 . Hepe01g1624 Mch11g0128 . Cla05g01879 Cam05g2011 Cec05g2022 Cco05g2080 Clacu05g2004 Cmu05g1885 Cre05g2006 Lsi08g01333 Csa02g02122 Chy03g01396 Cme04g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00729 Bma_Chr01 FPKM 159.982422 161.724792 254.999786 259.530273 123.677849 119.370659 106.548355 219.264053 220.036819 209.754303