Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00731 ATGGATGACGGCGGGCATCGTGAAAATGGAAGACACAAAGCCGAGCAATATAAGGCAGCTCATAGTCAGTGGTTAATGCAACCCCAGCCGTCAATGAAACAGATAATGGGTATTATGGCTGAAAGAGATGCAGCTATTCAGGAGCGAAATTTGGCACTGTCTGAGAAAAAGGCGGCCCTTGCTGAGCGAGATATGGCTATATTGCAACGGGATTCAGCAATTGCAGAAAGAAATAATGCATTATTGGAAAGAGACAATGCTATTGCAACTCTTCAATTCCGTGAAAACTCCTTAAGCAGTGGTAATATGTCATGTCCACCAGGTTGCCAAATTGCACGTGGAGTCAAGCATATGCATCATCTACAGCAACACACACACCATGTTCCTCACATGCATGAAGGTCCATATAGTAATAGGGAAGTACACCCAATGGATGCTGTCCCTATTTCACCAGTACCTTCAGAAGCCACAAAGCCAAAGCGGATCAAGCGGACTAAGGAAACTAAAGCAGTGTCACCTAATAAAAAAATTTCAAAACCTTCAAGAAAGGCGAAGAGGGAGGGTGAGGACTTGAACAAGGTGATGTTTGGCAAGCCACATGAGTGGAAGAATGGACATGATATAGGTGTCGGTGGCGATGATCTTAACAAACAACTTGTGGGTTCAAAGTCTGACTGGAAGGTTCAGGACCTTGGTCTGAACCAGGTTGCTTTTGATGAGTCAACCATGCCCGCACCAATATGCTCCTGTACTACAATCTCTAGACAGTGCTACAAATGGGGAAATGGTGGGTGGCAATCTGCTTGTTGCACAACCACCATGTCAATGTATCCTCTACCAGCCGTGCCGAACAAACGCCACGCCCGTCTGGGTGGTCGAAAGATGAGTGGAAGTGCTTTTAACAAACTTCTTAGCAGGCTTGCTGCAGAAGGCCACGATCTCTCAGTTCCGGTTGATCTTCATAATCACTGGGCCAAGCATGGAACAAATCGCTACATCACAATAAAGTAG 1011 45.8 MDDGGHRENGRHKAEQYKAAHSQWLMQPQPSMKQIMGIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNALLERDNAIATLQFRENSLSSGNMSCPPGCQIARGVKHMHHLQQHTHHVPHMHEGPYSNREVHPMDAVPISPVPSEATKPKRIKRTKETKAVSPNKKISKPSRKAKREGEDLNKVMFGKPHEWKNGHDIGVGGDDLNKQLVGSKSDWKVQDLGLNQVAFDESTMPAPICSCTTISRQCYKWGNGGWQSACCTTTMSMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSVPVDLHNHWAKHGTNRYITIK 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6715976 6717110 - Bma000944.1 Bma01g00731 75248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00731 336 MobiDBLite consensus disorder prediction 149 190 - -
Bma01g00731 336 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 209 - -
Bma01g00731 336 Coils Coil 51 85 - -
Bma01g00731 336 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g00731 336 PANTHER PROTEIN BASIC PENTACYSTEINE6 212 336 - -
Bma01g00731 336 MobiDBLite consensus disorder prediction 157 173 - -
Bma01g00731 336 PANTHER - 1 209 IPR010409 -
Bma01g00731 336 PANTHER - 212 336 IPR010409 -
Bma01g00731 336 MobiDBLite consensus disorder prediction 1 18 - -
Bma01g00731 336 Pfam GAGA binding protein-like family 1 336 IPR010409 -
Bma01g00731 336 SMART GAGA_bind_2 1 336 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00731 - - - jre:108983830 551.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00731 Bma-Chr1:6715976 Bma08g00777 Bma-Chr8:45094657 1.26E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma15g00056 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.7 8.0e-83 303.9
Bma14g01628 . 1 281 BBR/BPC Transcription factor family AT2G01930 54.0 1.7e-77 286.2
Bma15g00055 . 1 278 BBR/BPC Transcription factor family AT2G01930 55.0 3.6e-75 278.5
Bma14g00072 . 50 222 BBR/BPC Transcription factor family AT2G35550 59.9 6.7e-56 214.2
Bma14g01628 . 161 281 BBR/BPC Transcription factor family AT2G35550 56.2 3.9e-40 161.8
Bma15g00056 . 160 280 BBR/BPC Transcription factor family AT2G35550 56.2 8.7e-40 160.6
Bma14g01627 BCT,CCT 146 266 BBR/BPC Transcription factor family AT2G35550 53.7 6.3e-38 154.5
Bma08g00777 . 163 269 BBR/BPC Transcription factor family AT2G35550 57.9 6.9e-37 151.0
Bma15g00056 . 1 280 BBR/BPC Transcription factor family AT1G68120 52.4 5.3e-76 281.2
Bma14g00072 . 101 222 BBR/BPC Transcription factor family AT1G68120 51.2 9.7e-38 154.1
Bma08g00777 . 102 269 BBR/BPC Transcription factor family AT2G21240 66.9 5.6e-63 238.0
Bma03g01393 . 1 273 BBR/BPC Transcription factor family AT2G21240 60.7 2.4e-61 232.6
Bma08g00777 . 1 269 BBR/BPC Transcription factor family AT4G38910 58.0 2.0e-57 219.5
Bma03g01393 . 100 273 BBR/BPC Transcription factor family AT4G38910 60.0 3.0e-53 205.7
Bma01g00731 . 88 336 BBR/BPC Transcription factor family AT5G42520 56.4 2.2e-72 269.2
Bma03g01393 . 157 273 BBR/BPC Transcription factor family AT5G42520 70.6 3.0e-45 179.1
Bma14g00072 . 50 222 BBR/BPC Transcription factor family AT2G35550 59.9 6.7e-56 214.2
Bma14g01628 . 161 281 BBR/BPC Transcription factor family AT2G35550 56.2 3.9e-40 161.8
Bma15g00056 . 160 280 BBR/BPC Transcription factor family AT2G35550 56.2 8.7e-40 160.6
Bma14g01627 BCT,CCT 146 266 BBR/BPC Transcription factor family AT2G35550 53.7 6.3e-38 154.5
Bma08g00777 . 163 269 BBR/BPC Transcription factor family AT2G35550 57.9 6.9e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56667 PF06217 GAGA_bind 1.10E-103 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00731 Bma_Chr01 FPKM 4.219512 6.972979 1.154863 0.0 4.456327 7.288329 8.723307 0.594056 0.320375 0.280279