Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00733 ATGGCTCGTACGAAGCAGACTGCTCGAAAATCAACTGGCGGAAAGGCGCCGAGGAAACAGCTCGCCACAAAGGCTGCTCGGAAATCGGCGCCGACGACCGGTGGAGTCAAAAAGCCCCATCGTTATCGTCCTGGAACCGTTGCTCTTCGTGAGATTCGTAAGTACCAGAAGAGCACCGAACTTTTGATCCGCAAGTTGCCGTTCCAGCGGCTAGTACGTGAAATAGCACAGGATTTTAAGACGGATTTGAGATTCCAGAGCCACGCTGTTCTTGCGCTACAGGAGGCTGCGGAGGCATATTTGGTGGGGCTATTCGAAGACACCAACCTGTGCGCTATCCACGCGAAGAGGGTGACAATCATGCCGAAAGACATTCAGCTAGCCCGGCGAATTCGCGGGGAGCGCGCTTGA 411 54.74 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6724220 6724918 + Bma000946.1 Bma01g00733 75250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00733 136 SUPERFAMILY Histone-fold 2 133 IPR009072 GO:0046982
Bma01g00733 136 PANTHER HISTONE H3 1 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
Bma01g00733 136 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 PANTHER - 1 136 - -
Bma01g00733 136 MobiDBLite consensus disorder prediction 1 43 - -
Bma01g00733 136 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bma01g00733 136 Gene3D Histone, subunit A 2 136 IPR009072 GO:0046982
Bma01g00733 136 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00733 K11253 H3; histone H3 - nnu:104604415 266.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00733 Bma-Chr1:6724220 Bma07g00401 Bma-Chr7:4899041 1.59E-93 dispersed
Bma01g00733 Bma-Chr1:6724220 Bma15g01057 Bma-Chr15:42521560 5.75E-97 transposed
Bma01g00733 Bma-Chr1:6724220 Bma03g01215 Bma-Chr3:18979146 5.45E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00783 . Bda01g01526 . . Bma01g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1389 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000133 8 11 8 7 8 7 11 7 5 4 6 7 6 5 6 10 7 12 7 7 6 8 7 7 6 4 7 9 7 5 215
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00733 Bma_Chr01 FPKM 8.07523 9.152539 1.75759 1.692873 3.138219 3.694062 2.52074 4.328371 4.833441 3.697394