Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00739 ATGAAGATCCAGTGCGACGTCTGTAACAGAGACGAAGCCTCTGTTTTCTGCGTCGCCGACGAAGCCGCCATTTGCGCCGCTTGCGACCACCTTGTCCACCACGCAAACAAGCTCGCTTCGAAACACCACCGATTTTCTCTTCTCCACCCTTCTGCAAAGCAATCCACTCCTTGCGATGTCTGCCAAGAGAGAAGAGCTTTTTCGTTTTGTCAGCAGGACAGAGCGATGCTTTGCAGAGACTGCGACTTTCAGATTCATAGCGCTAACGAGCACACAAAAAAGCATGATAGGTTTCTTCTTACTGGGATCAAGCTTTCTGCGACGTCTGATTTACACGCACAATCTAAACCAGGTTTAACCAAGGGTGATGGTAGCGTCGTTGTTCCCGATCTAAAATTAAACCCCATGGTCAAGAAGTCCGCTTCTGCTTCATCTGCAATGTCGAAACCAGAATCTTTGAGTGAAAGTTCATCAACTTTACCTCTTGTTCTGCCTATAAATAAGGACGGTGAGGAAGATTGGAAAGCTAATGGAGGGGATGACTTGGCTAGTAGCATATCAGAGTATTTGATAGAGACACTTCCTGGTTGGCACGTTGAAGATCTTCTGGATTCATCTCCTCCTTTTGGTTTCTGTAAGACTGATGATGATTCCACTCTTCCAATCATGGACGATGAACTTGAAAACAGTCTAAGAGTCTTTTGGGTGCCTCAGGCAGCATCCTCTCGGCAACCTGCAGAAAGGAAGAGTGGGGAAAATGTCTTCACCGAATCAGAAGAATCAAACATAAAAGCAATCAGAGGAGGGTGGATAGACGATGGCTTCACAGTTCCCCAAATCTGCCCTTCATCTCCTGGTCTCAAGAGATCCAGGCCATTTTGGTAG 885 46.67 MKIQCDVCNRDEASVFCVADEAAICAACDHLVHHANKLASKHHRFSLLHPSAKQSTPCDVCQERRAFSFCQQDRAMLCRDCDFQIHSANEHTKKHDRFLLTGIKLSATSDLHAQSKPGLTKGDGSVVVPDLKLNPMVKKSASASSAMSKPESLSESSSTLPLVLPINKDGEEDWKANGGDDLASSISEYLIETLPGWHVEDLLDSSPPFGFCKTDDDSTLPIMDDELENSLRVFWVPQAASSRQPAERKSGENVFTESEESNIKAIRGGWIDDGFTVPQICPSSPGLKRSRPFW 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6771919 6773063 - Bma000953.1 Bma01g00739 75256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00739 294 MobiDBLite consensus disorder prediction 139 159 - -
Bma01g00739 294 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bma01g00739 294 CDD Bbox1_BBX-like 57 100 - -
Bma01g00739 294 Pfam B-box zinc finger 54 93 IPR000315 GO:0008270
Bma01g00739 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma01g00739 294 Gene3D Classic Zinc Finger 1 98 - -
Bma01g00739 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 292 - -
Bma01g00739 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma01g00739 294 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bma01g00739 294 CDD Bbox1_BBX-like 5 47 - -
Bma01g00739 294 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 292 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00739 Bma05g00152 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00739 Bma-Chr1:6771919 Bma12g00543 Bma-Chr12:21913214 8.50E-63 dispersed
Bma01g00739 Bma-Chr1:6771919 Bma01g02354 Bma-Chr1:81170438 1.71E-50 wgd
Bma01g00739 Bma-Chr1:6771919 Bma05g00152 Bma-Chr5:4548087 1.06E-133 wgd
Bma01g00739 Bma-Chr1:6771919 Bma06g00103 Bma-Chr6:1487047 1.42E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56668 PF00643 zf-B_box 6.00E-06 No_clan Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00739 - - tcc:18591484 305.449