Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00741 ATGGCTGGATTTTTCAATCTAGGCGGGAGAGATCAAGATCTACGAAACAAAGAAAAGGAAGACGGAGAAGAAGAAGAAGATCAGAGAGCACAAAACCTATACTTGTACAGACAGGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAGTACAATCAGCAAAACACGAGCAACTACCTGTCTTTCGGTGTGGGTCCCAGCCAAAGAAACTTCATGAACGTCTCTGATCATGATTTATCAAGATCAGGCGGCGGAGGAGGAGGAGGAGGGATGAATTGCCAAGACTGTGGAAATCAAGCCAAGAAAGACTGCTCTTATTTGAGGTGCAGAACTTGCTGTAAAAGCAGAGGTTTTCAATGTCAAACCCACGTGAAAAGCACTTGGGTTCCGGCTGCCAAACGGCGGGAGAGGCAGCAGCAGCTGGCGGCTTTGCATCGTCAGCCGTCGGAAGGGCCGTCGCAACTTAGGCCGGAAGAGAATACGAAAAGGCTCAAGGAGTTGAACATGGGCGCTTCTTCTTCTCTTGCCTGCGCTCGGTTAGAGCTGACGGAGTTTCCAGCTGAGGTGAATTCCCCAGCTGTCTTTCGCTGCGTGAAAGTTCGTGCAATGGACGATGAAGATGAACAGTTTGCATATCAGACGGCGGTAACCATCGGCGGCCATGTCTTCAAAGGAATTCTCTACGATCAAGGGCATGAAAGTCGTTACACCGGCGGAGGCGGTGAATACTCCTCCGGCCACGGCGGTGATGAAGCCCAGCAACTTAACCTTATTACTGGACCCTCTGACACCATACCCACTGCAACTACTAGTAATCTTTCTGCTACATTGCTCGACTCTTCTCTATATCCAGCTCCTCTTACTGCATTCATAGATGGCACGCAGTTCTTCCCACATCCCCGGCCATGA 912 49.89 MAGFFNLGGRDQDLRNKEKEDGEEEEDQRAQNLYLYRQEEIYNKGFEIWPQYNQQNTSNYLSFGVGPSQRNFMNVSDHDLSRSGGGGGGGGMNCQDCGNQAKKDCSYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALHRQPSEGPSQLRPEENTKRLKELNMGASSSLACARLELTEFPAEVNSPAVFRCVKVRAMDDEDEQFAYQTAVTIGGHVFKGILYDQGHESRYTGGGGEYSSGHGGDEAQQLNLITGPSDTIPTATTSNLSATLLDSSLYPAPLTAFIDGTQFFPHPRP 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6793248 6794636 + Bma000955.1 Bma01g00741 75258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00741 303 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 301 IPR007818 GO:0003700|GO:0006355
Bma01g00741 303 MobiDBLite consensus disorder prediction 1 30 - -
Bma01g00741 303 MobiDBLite consensus disorder prediction 11 30 - -
Bma01g00741 303 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 186 232 IPR006511 -
Bma01g00741 303 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 93 135 IPR006510 -
Bma01g00741 303 Pfam Domain of unknown function (DUF702) 91 234 - -
Bma01g00741 303 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00741 Bma04g00224 CCT
Bma01g02345 Bma01g00741 CCT
Bma01g00741 Bma04g00224 ECH
Bma01g02345 Bma01g00741 ECH
Bma01g00741 Bma01g02345 ECH
Bma01g00741 Bma05g00149 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00741 Bma-Chr1:6793248 Bma15g00973 Bma-Chr15:37616023 1.76E-82 dispersed
Bma07g00281 Bma-Chr7:3479871 Bma01g00741 Bma-Chr1:6793248 7.09E-46 dispersed
Bma01g00741 Bma-Chr1:6793248 Bma01g02345 Bma-Chr1:81040150 8.57E-104 wgd
Bma01g00741 Bma-Chr1:6793248 Bma03g00977 Bma-Chr3:10398751 3.22E-67 wgd
Bma01g00741 Bma-Chr1:6793248 Bma04g00224 Bma-Chr4:1914050 6.87E-114 wgd
Bma01g00741 Bma-Chr1:6793248 Bma05g00149 Bma-Chr5:4476375 8.44E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56669 PF05142 DUF702 3.20E-64 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00741 - - jre:108991308 361.688