Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00744 ATGACCCATTTTTTCTCCAGCTTTCTGCTTCTGACTCTCCTTCTCCTCTTGCATGATCCTTGTCTTTCTTCAACTCCAGTCATCTCCGAGCTCTTCGAAAACTGGTGTAGACACCATGGAAAAGGGTATTCTACAGAAGCAGAGAAACTCCACAGGCTCAAAGTGTTCGAAGATAACTATGCCTTCGTTAACAATCACAACGTTGGAAATTCTTCCTACTCCCTCTCTCTCAACGCGTTCGCCGATCTTACCCACCACGAGTTCAAGGCTTCTCGTTTGGGTCTTTCTGCTTCTGGGTTCGATTCTCAGCGTGTTCTACCAACTTCGCGTGAATCCAATCTGATTGTTGAAGTTTCTGCTTCGATTGATTGGAGAAAGGAAGGGGCAGTGACTCGTGTGAAGGATCAAGGAAGTTGCGGTGGGTGTTGGTCGTTTTCGGCAACCGGAGCTATTGAAGGAATCAATAAGATTGTCACCGGATCTCTTATTAGCCTTTCGGAACAAGAGTTGATTGATTGCGACCGATCCTATAACAGCGGATGCGAGGGTGGACTTATGGATTATGCGTTTAAATTTGTCATCGATAACAAAGGAATTGACACCGAAGAAGATTACCCCTTTCAAGCTCATGACAAGTCCTGCAATAAAGGAAAGCTGAATAGGCATGTTGTTACAATTGATGGTTATACCGATGTGCCTTCGAACAATGAGAACGAGTTGCTCAAAGCCGTTGCGACCCAGCCTGGGATTTTCAACGGTCCATGTTCGACTTCCTTGGATCATGCGGTGTTGATTGTAGGGTACGGAACGAAAAATGGAGCTGACTATTGGATCGTGAAGAACTCGTGGGGTTCTCATTGGGGGATGGACGGCTATATTCACATGGAAAGAAACAGTGGGAATTCACATGGAGTTTGTGGTATAAACATGTTGGCTTCATATCCAACAAAGACGAGTCCAAATCCTCCTCCTCCGCCTTCTCCGGGTCCTACAAAATGTGATCTTCTCACTCACTGCCGAGAAGGGGAGACGTGTTGTTGTTCGAAGCGATTTCTTGGGATTTGCCTTAAGTGGAAATGCTGTGGGTTGGATTCTGCTATTTGCTGTGAAGACAACCTCCATTGCTGTCCTCATGATTACCCCATTTGTGATATTAAGAGGAACTTATGCCTCAAGGTTTGTCTCTTTCCTCTGCTTTTATACTTCATTCCAGTGCTGGAATTAAAATCATTCGAAGGGAACGACCCAAGTAGAAGAACTCCAATGGCGGAAGAGGGACAGGTGATTGCTTGCCATTCTGTTGAAACCTGGAAGGAGCAGCTCGAGAAAGGAACGCAAAGCAAGGCACTGATTGTGGTGGATTTCACTGCTACCTGGTGCGGTCCATGCCGCACTATGGCCCCAATTTTCGCAGAGTTGGCTAAGAAGATAACAAATGTCATATTCTTGAAAGTGGACGTGGATGAATTGAGGACTGTTGCTGAGGAGTGGAGTGTCGAGGCAATGCCAACCTTCATTTTTCTGAAGGAAGGGAAATTGGTTGACAAGATAGTGGGTGCAAATAAGGATGGGCTTCACCAGATGATATCAAAGCATGCTTGA 1602 45.76 MTHFFSSFLLLTLLLLLHDPCLSSTPVISELFENWCRHHGKGYSTEAEKLHRLKVFEDNYAFVNNHNVGNSSYSLSLNAFADLTHHEFKASRLGLSASGFDSQRVLPTSRESNLIVEVSASIDWRKEGAVTRVKDQGSCGGCWSFSATGAIEGINKIVTGSLISLSEQELIDCDRSYNSGCEGGLMDYAFKFVIDNKGIDTEEDYPFQAHDKSCNKGKLNRHVVTIDGYTDVPSNNENELLKAVATQPGIFNGPCSTSLDHAVLIVGYGTKNGADYWIVKNSWGSHWGMDGYIHMERNSGNSHGVCGINMLASYPTKTSPNPPPPPSPGPTKCDLLTHCREGETCCCSKRFLGICLKWKCCGLDSAICCEDNLHCCPHDYPICDIKRNLCLKVCLFPLLLYFIPVLELKSFEGNDPSRRTPMAEEGQVIACHSVETWKEQLEKGTQSKALIVVDFTATWCGPCRTMAPIFAELAKKITNVIFLKVDVDELRTVAEEWSVEAMPTFIFLKEGKLVDKIVGANKDGLHQMISKHA 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6845557 6853878 + Bma000959.2 Bma01g00744 75261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00744 533 CDD Peptidase_C1A 120 314 IPR039417 -
Bma01g00744 533 ProSiteProfiles Thioredoxin domain profile. 397 533 IPR013766 -
Bma01g00744 533 SMART GRAN_2 333 390 IPR000118 -
Bma01g00744 533 PRINTS Papain cysteine protease (C1) family signature 261 271 IPR000668 GO:0006508|GO:0008234
Bma01g00744 533 PRINTS Papain cysteine protease (C1) family signature 136 151 IPR000668 GO:0006508|GO:0008234
Bma01g00744 533 PRINTS Papain cysteine protease (C1) family signature 276 282 IPR000668 GO:0006508|GO:0008234
Bma01g00744 533 CDD TRX_family 439 529 - -
Bma01g00744 533 Pfam Cathepsin propeptide inhibitor domain (I29) 32 88 IPR013201 -
Bma01g00744 533 SUPERFAMILY Granulin repeat 330 363 - -
Bma01g00744 533 PANTHER OS05G0508300 PROTEIN 18 248 - -
Bma01g00744 533 PANTHER OS05G0508300 PROTEIN 249 351 - -
Bma01g00744 533 SMART Inhibitor_I29_2 32 88 IPR013201 -
Bma01g00744 533 Pfam Papain family cysteine protease 119 315 IPR000668 GO:0006508|GO:0008234
Bma01g00744 533 Gene3D Granulin 330 393 IPR037277 -
Bma01g00744 533 SMART pept_c1 118 316 IPR000668 GO:0006508|GO:0008234
Bma01g00744 533 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 259 269 IPR025660 -
Bma01g00744 533 SUPERFAMILY Cysteine proteinases 30 316 IPR038765 -
Bma01g00744 533 ProSitePatterns Thioredoxin family active site. 452 470 IPR017937 -
Bma01g00744 533 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 136 147 IPR000169 -
Bma01g00744 533 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 276 295 IPR025661 -
Bma01g00744 533 Gene3D Cysteine proteinases 17 318 - -
Bma01g00744 533 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 248 - -
Bma01g00744 533 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 249 351 - -
Bma01g00744 533 SUPERFAMILY Thioredoxin-like 423 532 IPR036249 -
Bma01g00744 533 Pfam Granulin 344 391 IPR000118 -
Bma01g00744 533 Pfam Thioredoxin 430 530 IPR013766 -
Bma01g00744 533 Gene3D Glutaredoxin 408 533 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00744 - - - dzi:111312764 569.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00744 Bma-Chr1:6845557 Bma08g00516 Bma-Chr8:27938636 1.68E-126 dispersed
Bma05g00130 Bma-Chr5:4047178 Bma01g00744 Bma-Chr1:6845557 8.20E-63 dispersed
Bma05g00186 Bma-Chr5:5189348 Bma01g00744 Bma-Chr1:6845557 3.42E-08 dispersed
Bma08g00103 Bma-Chr8:1228138 Bma01g00744 Bma-Chr1:6845557 4.88E-26 dispersed
Bma08g01216 Bma-Chr8:51193050 Bma01g00744 Bma-Chr1:6845557 2.34E-24 dispersed
Bma13g00507 Bma-Chr13:9725461 Bma01g00744 Bma-Chr1:6845557 9.01E-34 dispersed
Bma14g00988 Bma-Chr14:11514066 Bma01g00744 Bma-Chr1:6845557 1.37E-15 dispersed
Bma01g00744 Bma-Chr1:6845557 Bma03g01355 Bma-Chr3:29483959 1.80E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00744 Bma_Chr01 FPKM 8.618552 8.420353 1.700178 2.07349 50.54129 52.345402 53.269768 1.14234 1.074669 0.995412