Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00745 ATGGTAAGCCGTGACTCCCCTCCGAGCCCAGCTTCAAATATGCTTCACCAGTTCATAATCTCAGACTCTCTTTCTTCCCACACCCAATTTGGTCACCCACATTTTCATGCCTACGGCTCATTTCCTCAGTCACTTGGAGAAAGAATGTCTAGATCTACTGAGTTTGTTCAAGCTCCTCCAATGGCGGAGGAACCTCATATCAGCCACAGTGCTCATCTTATGGACCTTCTCGGAGCAACAAGCGAGGCCAGCCATCGTGTTCAAAGTCTCTCGCTTTCTCTCGGCTCTCAAATGGCGTTAAACTCCAATTTCATCACTCCAAATTACTTCGTCTGCGGAGAAAATGACAGAGAAATTGGCAATTTAGGAGCTGAACAACAATGTAATGAGAACTACTCTTTCATGGATGGAGGAGCTTTTGCTTCATCTTCAACTTCTATGCATAGAAATACAGAGAGTTTCGCTTCAGTTCTCGGCAATTCTCGATACCTTAAACCGGCTCAATCTCTCCTCGAAGAAATCGTCAGCGTTGGTGGCAAAAATGTTGACATAAACAATGAGTTCTATGGAGGTAGAAGAGGAGCTCTTTGTTTATCTGCAGAATTAAGAGCAGAACTATGCAGTAATCCTCCATTTTCAGTAGAAAAACATGAAAACCAGCTCCAAATCGCAAAGCTTATATCCTTGTTGGAGGAGGTCGAGGGTCGATACCAGAAGTACTGCCATCAAATGGAAGGAGTCGCATCGTCGTTTGAAGCCATAGCCGGTTACGGATCAGCCAAGTCGTATACTGCACTTGCACTTCAAGCAATGTCTAGGCACTTCTTCAGCCTTAGAGATGCCATAATTTGTCATATAAATCTCGAGAAAAGAAAACTTGTTCATAGTTTGCCGAGAATTAGTGCTGGTTTTTCGCAGCTTAGCTTGTTCGATAGAGAAAGCCGGAGCAGCCGGATGACGCTTCAACAGCTCGGAATGATTCACGGCCAAAGACAAGCATGGAGGCCCATCAGAGGCTTACCGGAGACCTCTGTGACGATACTCCGGTCGTGGCTTTTCGAGCATTTTCTCCATCCCTATCCAAATGACTCTGAAAAGCTAATGTTGGCTTCTCAAACTGGCCTCACCAAGAATCAGGTTTCAAACTGGTTTATAAACGCTCGGGTTCGATTGTGGAAGCCGATGATCGAGGAGATGTACAAAGAAGAATTCGGAGAATCTTCAGAGGACTCTAATCCATTAGCCGGTGGCTCAAATACAGGAGAAGGAGCTATTACAGATTATGCAGAGGATTAA 1296 44.98 MVSRDSPPSPASNMLHQFIISDSLSSHTQFGHPHFHAYGSFPQSLGERMSRSTEFVQAPPMAEEPHISHSAHLMDLLGATSEASHRVQSLSLSLGSQMALNSNFITPNYFVCGENDREIGNLGAEQQCNENYSFMDGGAFASSSTSMHRNTESFASVLGNSRYLKPAQSLLEEIVSVGGKNVDINNEFYGGRRGALCLSAELRAELCSNPPFSVEKHENQLQIAKLISLLEEVEGRYQKYCHQMEGVASSFEAIAGYGSAKSYTALALQAMSRHFFSLRDAIICHINLEKRKLVHSLPRISAGFSQLSLFDRESRSSRMTLQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPLAGGSNTGEGAITDYAED 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6871474 6873024 + Bma000960.1 Bma01g00745 75262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00745 431 SMART prehox3 152 284 IPR006563 -
Bma01g00745 431 ProSiteProfiles 'Homeobox' domain profile. 331 394 IPR001356 GO:0003677
Bma01g00745 431 Gene3D - 330 409 - -
Bma01g00745 431 Pfam Associated with HOX 157 282 IPR006563 -
Bma01g00745 431 Pfam Homeobox KN domain 351 390 IPR008422 GO:0003677|GO:0006355
Bma01g00745 431 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 2 412 - -
Bma01g00745 431 CDD homeodomain 334 395 IPR001356 GO:0003677
Bma01g00745 431 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 412 - -
Bma01g00745 431 MobiDBLite consensus disorder prediction 403 431 - -
Bma01g00745 431 SMART HOX_1 334 398 IPR001356 GO:0003677
Bma01g00745 431 SUPERFAMILY Homeodomain-like 340 401 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00745 Bma04g00222 CCT
Bma01g00745 Bma04g00222 ECH
Bma01g00745 Bma05g00135 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00745 Bma-Chr1:6871474 Bma05g00135 Bma-Chr5:4158704 0 dispersed
Bma01g00745 Bma-Chr1:6871474 Bma01g02340 Bma-Chr1:81010313 4.60E-70 wgd
Bma01g00745 Bma-Chr1:6871474 Bma04g00222 Bma-Chr4:1894730 2.42E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56670 PF07526 POX 6.30E-37 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00745 - - vvi:100252354 543.888