Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00745 | ATGGTAAGCCGTGACTCCCCTCCGAGCCCAGCTTCAAATATGCTTCACCAGTTCATAATCTCAGACTCTCTTTCTTCCCACACCCAATTTGGTCACCCACATTTTCATGCCTACGGCTCATTTCCTCAGTCACTTGGAGAAAGAATGTCTAGATCTACTGAGTTTGTTCAAGCTCCTCCAATGGCGGAGGAACCTCATATCAGCCACAGTGCTCATCTTATGGACCTTCTCGGAGCAACAAGCGAGGCCAGCCATCGTGTTCAAAGTCTCTCGCTTTCTCTCGGCTCTCAAATGGCGTTAAACTCCAATTTCATCACTCCAAATTACTTCGTCTGCGGAGAAAATGACAGAGAAATTGGCAATTTAGGAGCTGAACAACAATGTAATGAGAACTACTCTTTCATGGATGGAGGAGCTTTTGCTTCATCTTCAACTTCTATGCATAGAAATACAGAGAGTTTCGCTTCAGTTCTCGGCAATTCTCGATACCTTAAACCGGCTCAATCTCTCCTCGAAGAAATCGTCAGCGTTGGTGGCAAAAATGTTGACATAAACAATGAGTTCTATGGAGGTAGAAGAGGAGCTCTTTGTTTATCTGCAGAATTAAGAGCAGAACTATGCAGTAATCCTCCATTTTCAGTAGAAAAACATGAAAACCAGCTCCAAATCGCAAAGCTTATATCCTTGTTGGAGGAGGTCGAGGGTCGATACCAGAAGTACTGCCATCAAATGGAAGGAGTCGCATCGTCGTTTGAAGCCATAGCCGGTTACGGATCAGCCAAGTCGTATACTGCACTTGCACTTCAAGCAATGTCTAGGCACTTCTTCAGCCTTAGAGATGCCATAATTTGTCATATAAATCTCGAGAAAAGAAAACTTGTTCATAGTTTGCCGAGAATTAGTGCTGGTTTTTCGCAGCTTAGCTTGTTCGATAGAGAAAGCCGGAGCAGCCGGATGACGCTTCAACAGCTCGGAATGATTCACGGCCAAAGACAAGCATGGAGGCCCATCAGAGGCTTACCGGAGACCTCTGTGACGATACTCCGGTCGTGGCTTTTCGAGCATTTTCTCCATCCCTATCCAAATGACTCTGAAAAGCTAATGTTGGCTTCTCAAACTGGCCTCACCAAGAATCAGGTTTCAAACTGGTTTATAAACGCTCGGGTTCGATTGTGGAAGCCGATGATCGAGGAGATGTACAAAGAAGAATTCGGAGAATCTTCAGAGGACTCTAATCCATTAGCCGGTGGCTCAAATACAGGAGAAGGAGCTATTACAGATTATGCAGAGGATTAA | 1296 | 44.98 | MVSRDSPPSPASNMLHQFIISDSLSSHTQFGHPHFHAYGSFPQSLGERMSRSTEFVQAPPMAEEPHISHSAHLMDLLGATSEASHRVQSLSLSLGSQMALNSNFITPNYFVCGENDREIGNLGAEQQCNENYSFMDGGAFASSSTSMHRNTESFASVLGNSRYLKPAQSLLEEIVSVGGKNVDINNEFYGGRRGALCLSAELRAELCSNPPFSVEKHENQLQIAKLISLLEEVEGRYQKYCHQMEGVASSFEAIAGYGSAKSYTALALQAMSRHFFSLRDAIICHINLEKRKLVHSLPRISAGFSQLSLFDRESRSSRMTLQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPLAGGSNTGEGAITDYAED | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6871474 | 6873024 | + | Bma000960.1 | Bma01g00745 | 75262 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00745 | 431 | SMART | prehox3 | 152 | 284 | IPR006563 | - | |
Bma01g00745 | 431 | ProSiteProfiles | 'Homeobox' domain profile. | 331 | 394 | IPR001356 | GO:0003677 | |
Bma01g00745 | 431 | Gene3D | - | 330 | 409 | - | - | |
Bma01g00745 | 431 | Pfam | Associated with HOX | 157 | 282 | IPR006563 | - | |
Bma01g00745 | 431 | Pfam | Homeobox KN domain | 351 | 390 | IPR008422 | GO:0003677|GO:0006355 | |
Bma01g00745 | 431 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 11 | 2 | 412 | - | - | |
Bma01g00745 | 431 | CDD | homeodomain | 334 | 395 | IPR001356 | GO:0003677 | |
Bma01g00745 | 431 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 412 | - | - | |
Bma01g00745 | 431 | MobiDBLite | consensus disorder prediction | 403 | 431 | - | - | |
Bma01g00745 | 431 | SMART | HOX_1 | 334 | 398 | IPR001356 | GO:0003677 | |
Bma01g00745 | 431 | SUPERFAMILY | Homeodomain-like | 340 | 401 | IPR009057 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00745 | Bma04g00222 | CCT | |
Bma01g00745 | Bma04g00222 | ECH | |
Bma01g00745 | Bma05g00135 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00745 | Bma-Chr1:6871474 | Bma05g00135 | Bma-Chr5:4158704 | 0 | dispersed | |
Bma01g00745 | Bma-Chr1:6871474 | Bma01g02340 | Bma-Chr1:81010313 | 4.60E-70 | wgd | |
Bma01g00745 | Bma-Chr1:6871474 | Bma04g00222 | Bma-Chr4:1894730 | 2.42E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56670 | PF07526 | POX | 6.30E-37 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00745 | - | - | vvi:100252354 | 543.888 |