Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00752 ATGGGAAAGTATTCCTCTTCTGTATCGGCCTTTACCCGGACGATTGAATATTGTGCTGACACGTTCTGCGAGTTTGACATCAGAGCTTCTGAAAATGTTGTGATATGCAGAAGCATTCCATCAGCCCTGGAGCTATTATCCGAACCTCCATACTCTTTGTCTGTGGAGAAAGTTTATGTCATAGGAGGTGGCCAGATATTGAGTGAAGCGCTCAACGGTCCACGATGTCATGCTATCCACATTACTGAGATTGAGACTATCATTGAATGCGACACTTTCATTCCTACTATCGATTTGTCAATATTCCGTCCCTGGTACTCTTCCATTCCATTGGTGGAAAACAATATTCGATACTCATTTGTGACTTATGTCGGAGAGGCTCAATGCCTGGCAGTGGGAACTTAG 405 43.95 MGKYSSSVSAFTRTIEYCADTFCEFDIRASENVVICRSIPSALELLSEPPYSLSVEKVYVIGGGQILSEALNGPRCHAIHITEIETIIECDTFIPTIDLSIFRPWYSSIPLVENNIRYSFVTYVGEAQCLAVGT 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6947574 6948055 + Bma000969.1 Bma01g00752 75269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00752 134 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 24 124 - -
Bma01g00752 134 Pfam Dihydrofolate reductase 31 123 IPR001796 GO:0004146|GO:0046654
Bma01g00752 134 Gene3D Dihydrofolate Reductase, subunit A 9 124 IPR024072 -
Bma01g00752 134 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 125 IPR001796 GO:0004146|GO:0046654
Bma01g00752 134 PANTHER THYMIDYLATE SYNTHASE 1 24 124 IPR045097 GO:0016741
Bma01g00752 134 SUPERFAMILY Dihydrofolate reductase-like 29 124 IPR024072 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00752 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - qsu:112011045 146.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00752 Bma-Chr1:6947574 Bma12g00503 Bma-Chr12:15828715 3.72E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016208 2 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00752 Bma_Chr01 FPKM 1.327394 0.835588 0.410679 0.0 0.401833 0.0 0.0 1.139159 0.69506 0.952735