Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00760 ATGAATATTGGTGGGAACATTTACGACGGCTGCGGAGAGTTCATGCCGAACGGCGAAGACGGAACCCTAGAAGCCTTGAAATGCGCCGCCTGCGACTGCCACCGTAATTTTCACCGAAAAGAAGTGGACGGCGAGACGCAATTGATCAGTCCGACCTCGAGAAGAACCATTGTCCTCAATCACCTCCAGCTTCCACCGCCATTGCCGTCTCCCCACCACCATAAATTCTCAATGGGCCTGAATTTCCACTCAAGCCCTACCGCTCCGATCGTGGCGCCCGTGAACGTCGCATTCGGCGGAAACGAATCCTCAAGCGAAGATTTAAACGTCTTCCATTCCAACGCCGAAGGGGTTCCACACCCACCATTTTCACTCTCGAAGAAAAGGTTCAGAACCAAGTTCACTCAGGAACAGAAGAATAGAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAAACGAAGAAGAAGTAGACAAGTTCTGCGCAGAAGTAGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAATAACAAAACGACCACCATGAAAAAGCAAAGCGAGAATCATGATCAGACATTGGAGATCACAGGAACAGCGGACGAAAGAGATTAG 627 49.12 MNIGGNIYDGCGEFMPNGEDGTLEALKCAACDCHRNFHRKEVDGETQLISPTSRRTIVLNHLQLPPPLPSPHHHKFSMGLNFHSSPTAPIVAPVNVAFGGNESSSEDLNVFHSNAEGVPHPPFSLSKKRFRTKFTQEQKNRMLEFAEKVGWRMQKQNEEEVDKFCAEVGVKRQVLKVWMHNNKTTTMKKQSENHDQTLEITGTADERD 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6996925 6997551 - Bma000977.1 Bma01g00760 75277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00760 208 Pfam ZF-HD protein dimerisation region 2 42 IPR006456 -
Bma01g00760 208 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 190 - -
Bma01g00760 208 MobiDBLite consensus disorder prediction 187 208 - -
Bma01g00760 208 SUPERFAMILY Homeodomain-like 122 186 IPR009057 -
Bma01g00760 208 Gene3D - 118 188 - -
Bma01g00760 208 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 41 IPR006456 -
Bma01g00760 208 MobiDBLite consensus disorder prediction 185 208 - -
Bma01g00760 208 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 2 42 IPR006456 -
Bma01g00760 208 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 2 190 - -
Bma01g00760 208 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 127 183 IPR006455 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00760 Bma05g00124 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00760 Bma-Chr1:6996925 Bma06g00120 Bma-Chr6:1632572 1.55E-52 dispersed
Bma01g00760 Bma-Chr1:6996925 Bma03g00988 Bma-Chr3:10644405 1.98E-54 wgd
Bma01g00760 Bma-Chr1:6996925 Bma05g00124 Bma-Chr5:3902942 1.29E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56672 PF04770 ZF-HD_dimer 3.50E-21 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00760 - - csv:101216040 324.324