Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00767 ATGGAAAGTGCTTTTGCTAGCGCCTCATCGATCTCAGACCAGAGGCAGAAGATCGAGCAGTACAAGCTTATTTTGGCCGGAGTTATTTCCTCTAATGACATTTCTCAAGCAAAATTGTTTATTGACCACGTGTTATCCGACGAAGTTCCGCTAGTTGTATCGCGGCAGCTTTTGCAGACTTTTGCGCAGGAGTTAAGGAATTTGGAGCCGGAGATTCAGAAGGAGATCGCCCATTACACTCTTGCGCAGATTCAACCTCGAGTTGTTTCATTCGAAGAACAGGTGCTAATAATTAGAGAGAAACTGGCTGAATTGTATGAGTCGGAGCAGCAGTGGTCAAAAGCAGCACAGATGCTTAGTGGCATTGATCTTGACTCCGGAATGAGGTATATCTTTTCTATAATTCTGAAAATAAATATTTCTCTGCATGAAACTGCTAGATTGATTGATGATGCATTCCGACTCGCAAAATGTGTCCAAATTGCTCGCTTATATCTTGAGGTATTTAATGCAATTTGTTACTCATTTATAGCCTGGTCAGGATATATTTATGTCTGTGTATTATATCAAGTGAAATTTATATTTTCTGTGTGCTATGCAAGAATCTTAGATTTGAAGAGGAAGTTCTTGGAAGCAGCATTGAGATATTATGACATATCTCAAATTGAAAAGAGGCAAATAGGAGAAGAGGAGATTGATGAGGAAGCATTGGAGCAAGCTTTATCTGCGGCAGTTATGTGTACAATTCTAGCTGCTGCTGGCCCCCAGCGCTCTCGAGTTCTTGCTACATTATACAAAGATGAGCGGTGCTCAAAGCTAAAAATCTATCCAATTTTACAAAAGGTGTATTTGGAGAGAATTTTAAGAAAACCAGAAATTGATGCATTTTCTGAAGAGCTAAAAGCACATCAGAAAGCCATTCTGCCTGACAATTTTACTGTTCTGGATCGTGCGATGATTGAGCATAATCTTCTCAGCGCAAGCAAACTATATATGAACATAAGGTCGGCTAGATTTGATGAGTTGGGAACCTTGCTGGGGATTCCTCCTAATAAGGCTGAGAAGATAGCATCCCGTATGATTTTTGAGGATAGAATGAGGGGATCTATAGATCAGGTTGAAGCTGTAATTCATTTTGAAGATGACACTGAAGAACTGCAGCAATGGGATCAGCAGCTGCTATTAATACATGTTCTTGCTCTATCTGCACAGATAGTTGGACTCTGTCAAGCGCTCAATGATGTCCTGGATGGCATGGCTAGGAAAGGCATGTCCATTCCAGTTTGA 1287 40.71 MESAFASASSISDQRQKIEQYKLILAGVISSNDISQAKLFIDHVLSDEVPLVVSRQLLQTFAQELRNLEPEIQKEIAHYTLAQIQPRVVSFEEQVLIIREKLAELYESEQQWSKAAQMLSGIDLDSGMRYIFSIILKINISLHETARLIDDAFRLAKCVQIARLYLEVFNAICYSFIAWSGYIYVCVLYQVKFIFSVCYARILDLKRKFLEAALRYYDISQIEKRQIGEEEIDEEALEQALSAAVMCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFSEELKAHQKAILPDNFTVLDRAMIEHNLLSASKLYMNIRSARFDELGTLLGIPPNKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQLLLIHVLALSAQIVGLCQALNDVLDGMARKGMSIPV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7078256 7082052 - Bma000988.2 Bma01g00767 75284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00767 428 ProSiteProfiles PCI domain profile. 208 384 IPR000717 -
Bma01g00767 428 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 1 428 IPR040134 -
Bma01g00767 428 SUPERFAMILY Winged helix DNA-binding domain 307 387 IPR036390 -
Bma01g00767 428 Gene3D - 307 388 IPR036388 -
Bma01g00767 428 Pfam PCI domain 284 380 IPR000717 -
Bma01g00767 428 SMART PINT_4 310 396 IPR000717 -
Bma01g00767 428 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 310 396 - -
Bma01g00767 428 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 1 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00767 K12178 COPS4, CSN4; COP9 signalosome complex subunit 4 - rcu:8288901 607.446
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g920 . . . . . . . . . . Cma01g01896 Cma09g00166 Car01g01479 . . Cpe06g00119 . . . . . . . . . . . . . . . . . Cone17ag1332 Cone20ag0144 Lsi04g01649 Csa03g04194 Chy04g00525 . . Blo18g00821 . Bda01g01489 Bpe02g01685 . Bma01g00767 . . Cmo01g01961 Cmo09g00163 . . . Car09g00146 . Cpe02g00138 . . . . . . . Cla05g01954 Cam05g2100 Cec05g2109 Cco05g2166 Clacu05g2092 Cmu05g1968 Cre05g2086 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007182 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00767 Bma_Chr01 FPKM 68.761246 72.025711 32.136253 33.522755 83.250275 89.363731 85.820068 66.403473 57.991234 57.922024