Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00775 ATGCTTCTTATCTCAAACCCTATGATGAAAGCTTCGTCTCCTTATCCCGACCTCTCCTTGAATATCAGTCCTCCATTTTTACCAGACACTGAAGATAATCAAGTCTCCAGCAAACCAGTAAACTGTGATCGAAGCTCTCCCACGTATTCCAGCAGCAGTACTGGAAGCGATTTAAGCCATGAAAACAGCTTATTCCGCTCAGAGAAGATGAGTTACTGCGTGGGTCCCAGTCAGTTGAGTTTGGGGATTGAAATGGCGGAGTTGGGCTCTGCGACGGTTCAAACGCCCAAAAACAACTACACTCGCCGTTTTACGCAGCAACCTTTTATCGACTGCCGGGAATTCAAAAGAAGCGACAAGATAATCAGTGGTGGAAAAAGAAGCATCAGAGCTCCCAGGATGCGATGGACCACGACCCTCCACGCGCATTTTGTACATGCGGTTCAGCTACTCGGCGGCCATGAAAGGGCCACACCAAAATCAGTGTTAGAGTTGATGAACGTGAAAGATCTAACCCTAGCTCACGTGAAGAGTCACTTGCAGGTATCTAGGGTTACAGATTTTTTCAATCTATACTTGATTTCAAATGATGATGAAATTGATAAACTTTTGGGGATTCGTTTTGTAGTCTGCTGCCTTTCTCGCTCATCATTATTGAACTTTCATAATTTTCAAGATTCATTTGTAGTGGGGAGGACAAAAGGGTATCTAGAAAGTAGTCTTCACCATTTCTACCTTTTTTGTTAA 747 43.78 MLLISNPMMKASSPYPDLSLNISPPFLPDTEDNQVSSKPVNCDRSSPTYSSSSTGSDLSHENSLFRSEKMSYCVGPSQLSLGIEMAELGSATVQTPKNNYTRRFTQQPFIDCREFKRSDKIISGGKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQVSRVTDFFNLYLISNDDEIDKLLGIRFVVCCLSRSSLLNFHNFQDSFVVGRTKGYLESSLHHFYLFC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7135120 7135971 - Bma000998.1 Bma01g00775 75292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00775 248 Gene3D - 131 188 - -
Bma01g00775 248 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 9 184 - -
Bma01g00775 248 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Bma01g00775 248 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 185 IPR006447 GO:0003677
Bma01g00775 248 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 9 184 IPR044847 GO:0000976|GO:0006355|GO:0010158
Bma01g00775 248 MobiDBLite consensus disorder prediction 23 61 - -
Bma01g00775 248 MobiDBLite consensus disorder prediction 26 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00775 - - - mesc:110615067 206.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00775 Bma-Chr1:7135120 Bma14g00077 Bma-Chr14:1033789 3.84E-30 dispersed
Bma01g00775 Bma-Chr1:7135120 Bma01g01166 Bma-Chr1:12844871 4.96E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56673 None None None None Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00775 Bma_Chr01 FPKM 8.418813 9.851632 18.34749 14.615392 13.205975 12.816957 14.671737 28.772312 34.668644 27.280079