Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00780 ATGGCAGGAATAGAGCGGCTGCAGCGAATGATCGCCGGCGCTGGAAATGCTCTTGGTCATCCCCCCGACTCCCCCACTTTGGATTCCTCGGAGCAGGTTTATATATCTTCGCTCGCACTCCTCAAGATGCTTAAGCACGGAAGAGCTGGAGTTCCCATGGAGGTGATGGGCCTTATGCTAGGGGAGTTTGTTGACGAGTACACAGTTCGTGTGGTTGATGTTTTCGCGATGCCACAGAGTGGTACTGGTGTTAGTGTGGAAGCAGTTGATCATGTTTTTCAGACCAACATGCTCGATATGCTTAAACAAACTGGACGGCCCGAGATGGTTGTGGGCTGGTATCATTCTCATCCTGGATTTGGGTGTTGGCTATCCGGTGTTGATATTAACACGCAACAGAGTTTTGAAGCTCTAAACCAGCGAGCTGTTGCTGTGGTGGTTGATCCAATTCAAAGTGTCAAGGGAAAAGTGGTGATTGATGCTTTCCGTCTGATTAACCCTCAAACCATGATGCTTGGGCAAGAACCACGTCAGACTACATCCAATCTTGGACATCTTAACAAACCGTCAATACAAGCGTTGATTCACGGACTGAATCGACATTATTATTCGATAGCAATTAACTACAGAAAGAATGAGCTCGAAGAGAAGATGTTGCTTAATCTTCACAAGAAAAAATGGACTGACGGTTTGACACTTCGGCAATTCGATGCACACTCCAAAACAAATGATCAGACAGTCCACGAAATGCTGAACTTGGCGGTGAAGTACAACAAGGCAGTGCAGGAGGAAGACGAGTTAGCACCTGAGAAGCTAGCAATAGCAAATGTGGGGAGGCAAGATGCCAAGAAGCACTTGGAGGAACACAGACCAGATGGGGGCTGGGACACCGCTAGGATTGGTCAAGCTCATCCTGTCGGAGTTACCTCTGTTTCATGGGCACCCTCCACGGCCCCCGGCGCCCTAGTTAGCTCAGGTTTGCTGGATCCTGTTCAGAAGCTGTGCTCAGGCGGTTGTGACAACACTGTTAAGGTGTGGAAGCTCAATAATGGGGCTTGGAAGATGGACTGCTTTCCGGCTCTTCAATTGCATAGCGACTGGGTTAGAGATGTTGCATGGGCTCCTAACCTTGGACTGCCAAAATCAACCATCGCAAGTGCGTCACAGGACGGGAAAGTTATAATATGGACGGTGGGCAAGGAAGGTGACGAGTGGGAAGGTAGAGTGCTTTGTGATTTCAAGACCCCCGTTTGGAGGGTGTCATGGTCACTGACCGGAAACATATTAGCTGTGGCGGACGGGAACAACAATGTTAGTTTATGGAAGGAAGCCGTAGATGGGGAGTGGCAGCAGGTGACGACAGGTCGACCCATGAGTGTCGAATTTTAA 1389 49.24 MAGIERLQRMIAGAGNALGHPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRQFDAHSKTNDQTVHEMLNLAVKYNKAVQEEDELAPEKLAIANVGRQDAKKHLEEHRPDGGWDTARIGQAHPVGVTSVSWAPSTAPGALVSSGLLDPVQKLCSGGCDNTVKVWKLNNGAWKMDCFPALQLHSDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVGKEGDEWEGRVLCDFKTPVWRVSWSLTGNILAVADGNNNVSLWKEAVDGEWQQVTTGRPMSVEF 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7158286 7167396 + Bma001003.1 Bma01g00780 75297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00780 462 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 29 140 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma01g00780 462 SMART pad1_6 32 167 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bma01g00780 462 CDD MPN_RPN11_CSN5 22 288 - -
Bma01g00780 462 Pfam Maintenance of mitochondrial structure and function 175 288 IPR024969 -
Bma01g00780 462 ProSiteProfiles MPN domain profile. 33 168 IPR037518 -
Bma01g00780 462 SUPERFAMILY JAB1/MPN domain 33 170 - -
Bma01g00780 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 398 - -
Bma01g00780 462 SUPERFAMILY WD40 repeat-like 300 444 IPR036322 GO:0005515
Bma01g00780 462 SMART WD40_4 294 347 IPR001680 GO:0005515
Bma01g00780 462 SMART WD40_4 354 397 IPR001680 GO:0005515
Bma01g00780 462 SMART WD40_4 406 442 IPR001680 GO:0005515
Bma01g00780 462 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14 HOMOLOG 3 289 IPR035299 GO:0008237|GO:0061578
Bma01g00780 462 Gene3D Cytidine Deaminase, domain 2 19 236 - -
Bma01g00780 462 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 289 - -
Bma01g00780 462 Gene3D - 261 455 IPR015943 GO:0005515
Bma01g00780 462 Pfam WD domain, G-beta repeat 299 347 IPR001680 GO:0005515
Bma01g00780 462 Pfam WD domain, G-beta repeat 364 396 IPR001680 GO:0005515
Bma01g00780 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 398 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00780 K03030 PSMD14, RPN11, POH1; 26S proteasome regulatory subunit N11 - oeu:111408810 555.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00780 Bma04g00175 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00780 Bma-Chr1:7158286 Bma04g00175 Bma-Chr4:1466617 9.78E-164 dispersed
Bma06g00040 Bma-Chr6:686178 Bma01g00780 Bma-Chr1:7158286 3.26E-06 dispersed
Bma10g00798 Bma-Chr10:12928583 Bma01g00780 Bma-Chr1:7158286 1.24E-06 dispersed
Bma01g00780 Bma-Chr1:7158286 Bma02g00399 Bma-Chr2:6156013 1.32E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g789 . Blo12g00949 . Bda03g00221 . Bpe04g00188 Bma04g00175 . Cmo05g00200 . Cma01g01854 Cma09g00215 . . . Cpe06g00150 . Bhi04g00319 Tan02g1886 . . Hepe10g0709 . Lcy13g2038 Cla08g01545 Cam08g2040 Cec08g1618 Cco08g1751 Clacu08g1728 . Cre08g1512 . . Cone17ag0830 Cone20ag0176 Lsi04g01579 Csa04g02390 . . . Blo18g00834 . . Bpe02g01675 . Bma01g00780 . Sed02g1024 Cmo01g01915 Cmo09g00208 . Cma05g00201 Car05g00167 Car09g00183 Cpe11g00165 Cpe02g00168 Bhi09g03345 Tan01g4815 Cmetu07g1253 . Hepe01g1743 Mch11g0270 . Cla05g02023 Cam05g2173 Cec05g2189 Cco05g2237 Clacu05g2166 Cmu05g2034 Cre05g2162 . . Chy07g00117 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002514 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 2 3 2 1 1 2 2 1 2 2 2 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00780 Bma_Chr01 FPKM 33.768242 36.833237 35.996113 36.45364 48.969101 54.133976 56.347523 49.785919 49.752949 45.151657