Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00782 ATGGCGGATGTGATGCTGATGGGGGAGATTGAAGCCACCGCCGGAATCGATTTCTCCCAAATCGATCTTGAGTCCATTCGCCTTCCTCCAGGTGAAGACTTTGGCATCATTAGTGATGATGAGGATGTTTTGCAAGAGGAGAATCTGGAGTTTGATACTGGTTTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGGGAAAAATTTGAGAAGCTTGAAGGTGTAATTCGCAAGATATACAGTCAAATTGGAATAATAAAGGAGGAGGGTCTTTGGATGCCTGTTGATCCTGAGACGAACAAAACTTTAGGTTACTGCTTCATTGAGTACAATACCCCGCAGGAAGCTGAGCTTGCTAAGGAGAAAACAAATGGGTACAAACTGGATAGGGCACACATATTTACTGTTAGCATGTTTGATGATTTCGATAAGTTTATGAAGGTTCCTGATGAGTGGGCCGCTCCAGAAAGTGTTTCATACTCTCCGGGGGAGAATCTTCAAAGTTGGCTTACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGTGCTAGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATAAGAAGCCTGACCCTGTGTACAAGCGTACATTCTGGACTGAAGGTTTTATTCAGTGGTCATCTCTTGGGACTTACTTGGCAACAGTTCACCGCCAAGGTGCTGCTGTTTGGGGTGGTGCCAGTACCTTTAATCGTTTAATGCGTTATGCTCATCCTCAGGTTAAGCTGATTGATTTTTCACCCGGTGAGAAATATTTAGTAACTTACAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCCGATGAATTTGCTGTTGGAGGAACAGGAGCTGTCGCAGGAGTATCTTGGCCAGTTTTTAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATTTAATCTCTGTTTATGAAACGGAAACTTTTTCTCTAGTCGACAAGAGGTCTTTGAAGGTTGACAATGTTGTGGATTTTAGTTGGTCTCCAACTGATCCAATTATTGCAATTTTTGTTCCCGAGCTAGGTAGCGGCAACCAACCTGCTAAGGTTAGCCTTGTCCAAATTCCTAACAAAGAAGAAATCAGGCAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTATTGGCAAAACAATGGTGATTATCTTGCTGCTAAGGTTGATCGTTATACAAAGACAAAAAAGAGCACATACACTGGGTTTGAGCTTTTCCGCATCAAAGAACGTGATATTCCAATTGAGGTTTTGGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCCTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCATGGTGATAACCCCAGGCCAGACATAAGTTTTTATTCAATGCGATCTGCTCATAATATGGGTCGAGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCTGGACTGAAGGGGTTAAACGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTTATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTGGTATGTTGCAACTTCAGTGACTTCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGGAAGCTACTGTATAGAATATTGAAGGATCATTTCTGTCAGTTCTTGTGGCGACCGAGGCCACCATCGTTGTTATCACCAGAAAAAGAAGAGGAGATAGCTAAAAATTTGAAGAAGTACAGTAAGAAGTACGAGGCAGAAGATCAAGACGTGTCGATGCTATTAAGCGAGCAGGATCGGGAGAAACGAAAGACGTTGAAGGATGAATGGGATAAGTGGGTGAGTGAGTGGAAGAGGCTGCATGATGAAGAAAAACTGTGGAGGCAGGAGCTAAGGGATGGTGAAGCGAGTGACGAAGAAGAAGAATATGAAGCCAAAGAGGTTGAAGTGGAGGAGATTCTTGATATTGTGGAGGAGGTTGTTGATCTTGAAGAGTAA 2142 42.11 MADVMLMGEIEATAGIDFSQIDLESIRLPPGEDFGIISDDEDVLQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGIIKEEGLWMPVDPETNKTLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFTVSMFDDFDKFMKVPDEWAAPESVSYSPGENLQSWLTDEKARDQFVIRASNDTEVLWNDARHKKPDPVYKRTFWTEGFIQWSSLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVAGVSWPVFRWGGKNDKYFARIGKNLISVYETETFSLVDKRSLKVDNVVDFSWSPTDPIIAIFVPELGSGNQPAKVSLVQIPNKEEIRQKNLFSVSDCKMYWQNNGDYLAAKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSAHNMGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRWYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFCQFLWRPRPPSLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKTLKDEWDKWVSEWKRLHDEEKLWRQELRDGEASDEEEEYEAKEVEVEEILDIVEEVVDLEE 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7169331 7173352 + Bma001004.1 Bma01g00782 75299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00782 713 SMART rrm1_1 58 140 IPR000504 GO:0003723
Bma01g00782 713 SUPERFAMILY RNA-binding domain, RBD 56 140 IPR035979 GO:0003676
Bma01g00782 713 Gene3D - 158 378 IPR015943 GO:0005515
Bma01g00782 713 SUPERFAMILY Tricorn protease domain 2 216 573 - -
Bma01g00782 713 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 12 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma01g00782 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 144 IPR000504 GO:0003723
Bma01g00782 713 Pfam Eukaryotic translation initiation factor eIF2A 402 603 IPR013979 -
Bma01g00782 713 CDD RRM_eIF3B 56 139 IPR034363 -
Bma01g00782 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 133 IPR000504 GO:0003723
Bma01g00782 713 Coils Coil 684 704 - -
Bma01g00782 713 Gene3D - 414 614 IPR015943 GO:0005515
Bma01g00782 713 PANTHER BNACNNG51870D PROTEIN 12 710 - -
Bma01g00782 713 PIRSF Transl_init_eIF3b 6 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bma01g00782 713 Gene3D - 52 151 IPR012677 -
Bma01g00782 713 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 45 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00782 Bma-Chr1:7169331 Bma01g01260 Bma-Chr1:16779422 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00782 K03253 - zju:107419937 1226.46