Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00789 GCTATGAAGATCACCGCCAGTTCTCTTCGCTCAGTTCCGCTTCTCTTCCTCTCATTCACTCTCGTCTTCACTCTCTTGCTCTCCATCTTCATTTTCATCCAACCTAATCGAATAATTTCTTCGCCTTCCTCCTCTCTGGCTTCACATGTCGCCTCTCAATTCCTTTCTTCCGCTTCCATCAATGTCTACGTTGCCGACCTTCCCAGATCTTTCAACTATGGCCTCCTCGACAAGTATTGGGCCTCCCAGACAGATTCGAGGCTCGGGAGCAACGCGGATTTGGATATCAGATTCAAACAGATGCACAAAGGTGAAAAATTTCCACATTATCCCGAGAATCCGTTGATCAAACAGTACAGTGCTGAATATTGGATCTTGGGGGACCTGATGACTCCTCAGGAGCAGAGAAGTGGGTCGTTTTCCAGGCGGGTTTTCAATTCTGAGGAAGCTGATGTTGTTTTCGTTCCATTTTTTGCTACTTTAAGCGCTGAAATGCAGCTAGGTACGGCGAAGGGGGCTTTTAGAAAGAAATTAGGAAATGAAGATTATGAGAGGCAGCGAAAGGTGGTGGATCTTGTGAAGAACACTGATGCTTGGAAGCGATCTGGGGGGAGAGACCATGTATTTGTTCTCACAGACCCTGTTGCAATGTGGCATGTTCGAGCCGAGATAGCCCCCGCTATTCTATTTGTGGTGGACTTTGGTGGGTGGTATAGGCTTGATTCAAAATCATCCACTGGAGATATGATTTCACACACTCAAGTTTCACTACTCAAAGATGTAATTGTGCCTTATACCCATCTTCTTCCAAGATTGGATTTATCCGATGACAAGGGGCGGAAGACGCTTCTTTACTTCAAAGGCGCTAAACACAGACACAGGGGAGGTCTTGTTCGGGAAAAATTATGGGACTTGCTATCGAACGAGTTGGATGTTATCATGGAAGAAGGCTTTCCAAATGCGACCGGCCGGGAGCAATCGATTAGAGGGATGAGATCATCGGAGTTCTGCTTACACCCAGCAGGGGACACCCCCACTTCATGCCGACTGTTTGATGCCATTCAAAGTCTCTGTATACCAGTCGTTGTGAGCGATGAAATCGAGCTTCCATTTGAAGGAATGATCGATTATTCAGAATTCTCTGTTTTTGTAGCCGTCAGCGATGCTCTAACTCCAAATTGGCTCATAAATCATCTTAGAAACTATCCGAAGCAGAAGAAAGAAAGATTTCGACAAAAAATTGCAGAGATTCAGCCTGTTTTCGAGTATGATAACGGCCGTGTAGGCGGTATTGGTCCGATTGCTTCGAATGGCGCAGTCAATCAAATATGGAGAAAGGTTCATCAGAAACTGCCAATGATAAAGGAAGCAATCTCTCGTGAAAGAAGAAAACCGAGAGGCATATCGATTCCACTTCGCTGTCATTGTACA 1431 45.56 AMKITASSLRSVPLLFLSFTLVFTLLLSIFIFIQPNRIISSPSSSLASHVASQFLSSASINVYVADLPRSFNYGLLDKYWASQTDSRLGSNADLDIRFKQMHKGEKFPHYPENPLIKQYSAEYWILGDLMTPQEQRSGSFSRRVFNSEEADVVFVPFFATLSAEMQLGTAKGAFRKKLGNEDYERQRKVVDLVKNTDAWKRSGGRDHVFVLTDPVAMWHVRAEIAPAILFVVDFGGWYRLDSKSSTGDMISHTQVSLLKDVIVPYTHLLPRLDLSDDKGRKTLLYFKGAKHRHRGGLVREKLWDLLSNELDVIMEEGFPNATGREQSIRGMRSSEFCLHPAGDTPTSCRLFDAIQSLCIPVVVSDEIELPFEGMIDYSEFSVFVAVSDALTPNWLINHLRNYPKQKKERFRQKIAEIQPVFEYDNGRVGGIGPIASNGAVNQIWRKVHQKLPMIKEAISRERRKPRGISIPLRCHCT 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7378549 7380537 - Bma030207 Bma01g00789 75306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00789 477 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 12 466 IPR004263 GO:0006486|GO:0016757
Bma01g00789 477 Pfam Exostosin family 58 398 IPR040911 -
Bma01g00789 477 PANTHER EXOSTOSIN FAMILY PROTEIN 12 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00789 - - - bhj:120087310 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00011 Bma-Chr1:251922 Bma01g00789 Bma-Chr1:7378549 4.85E-75 dispersed
Bma01g00784 Bma-Chr1:7184803 Bma01g00789 Bma-Chr1:7378549 0 dispersed
Bma01g00789 Bma-Chr1:7378549 Bma07g00417 Bma-Chr7:5140233 1.86E-85 dispersed
Bma01g00788 Bma-Chr1:7255858 Bma01g00789 Bma-Chr1:7378549 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1295 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00789 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010824 0 1 1 3 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 2 2 32