Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00797 ATGAAATTGCTACAACATGGCGTCGTCGGAGAACCAGACAATGTCGGTGCCGGCGGCCGTAGTCTGGTTGTCGGCGTGAAGCTTGACTCGCATAGCAGGGAGCTTCTGACTTGGGCTTTGGTGAAAGTTGCTCAGCCTGGTGACACTGTGATTGCTCTTCATGTTCTTGGCAACGACGGAATTGAAGAAAGTGGTGGAAATGGTTTCCTTGATTCAATGCGCAGGTCATTGAGTAATTCTTCCCAAATATTAAGTGATGATAATTATGCCATTGGTTGTGTAAAGGAAAACATTGATCTACCTAGTAAGAACCTGATCAAACAGAGTTGTACAATTTGCTCTCCGGCTTCTGCATTGCCGACTCATACTGTCAACCAATCTTTAAGAAAGTTATTTGGTGATGGGGTTGAACCTGAAAACTCTTTGGCCGTGGTACCAGTTCAGAAACTAGAAGAGGGATCAACTTCTATCAGGATCTTGATTAAAGATTTGCCCGGACTAAAACCTGGTTGGCCACTTCTTCAGCATTCTGATCCATCTCTAGGCCGACTTGATTCCAATATATCGTCAGTTCGGAAAATATCTGTTGTTCAGTGGGCTTTGAAGTTGCCAACAAGGTGTCCTTACAGTGGGACTTCGAATCAGAATCAGACCAGTTCCGATTCATTTCTGAATCTAGAGAGAAATAGTGGTGCAATTGTGCCGGTCGGTCTTGAACCAGTGTCTTCTCCGCGTTTCCCTGATCAAACTTCAATGGTATTACCTAAAGAATTGGATGATCTTCATAAAAAGCATTCATCGACTTGCCGATTGTTCAAGTATCAGGAACTTCTCCGAGCAACTTCTAATTTCTTTGCTGATAATTTGATTGGGAAAGGAGGTAGCAGCCAAGTTTACAGAGGCTGCCTTCCAGATGGGAAGGAAATAGCTGTGAAGATCTTAAAGCCATGTGAAGACGTCCTCAAGGAGTTTGTTTTAGAAATAGAAATTATTACTTCTTTGAATCACAAGAATATCATTTCCCTTTTAGGATTCTGCTATGAACACAACAAGCTCTTGTTGGTGTATGATTTTTTACCGAGAGGAAGCCTAGAAGATAACCTCCATTGTGAGTTGAAGTCAAACATCTGTTCTCTAAAATCAGGAAATGAAAAAGGTTCAGGTGCATTTGGCTGGAGTGAAAGATATAAGGCAGCTCTCGGCCTGGCCGAAGCTTTAGCTTATCTTCACGACGACAGAGCTCAACCCGTGATTCATAGAGATGTAAAATCGTCTAATGTGTTATTATCCGAAGATTTCGAGCCACAGTCCTTCTTCTCAATTGGTTACTTGGCCCCAGAGTACTTCATGCACGGAAAAGTAAACGACAAAATTGATGTCTATGCTTTCGGAGTGGTACTCCTTGAGCTTGTTTCAGGAAGAAAACCTATATGCACTGACTATCCTAAAGGCCAAGAGAGCCTAGTTATGTGGGCAGAGCCAATTCTAAATGGTGGAAAGGTGTCCCAATTGGTAGATCCAAGATTGGGGTGTAAGTATAACAAGGATCAGATGGAGAGGCTTGTTTTGGCGGCCAGTCTTTGCATCAGGCGCGCTCCTCGAGCTAGACCTCAAATGAGCTTGGTTTTGAAGCTCCTTCGAGGTGATGTCGAAGTAACCAAATGGGCGAGGCTTCAAGTCGATGCGGTAGACGAATCGGGAATGCTCGACGATGAAACATTTCCACGTTGTCATCTCCAGTCGCATATCAACCTCGCATTGCTGGACGTGGAGGATGACTCTGTGTCCGTGAGTAGCATTGAGCAAACTATATCATTAGAAGACTACCTGAGGGGAAGGTGGAGCCGTTCGTCGAGCTTAGACTAA 1866 44.05 MKLLQHGVVGEPDNVGAGGRSLVVGVKLDSHSRELLTWALVKVAQPGDTVIALHVLGNDGIEESGGNGFLDSMRRSLSNSSQILSDDNYAIGCVKENIDLPSKNLIKQSCTICSPASALPTHTVNQSLRKLFGDGVEPENSLAVVPVQKLEEGSTSIRILIKDLPGLKPGWPLLQHSDPSLGRLDSNISSVRKISVVQWALKLPTRCPYSGTSNQNQTSSDSFLNLERNSGAIVPVGLEPVSSPRFPDQTSMVLPKELDDLHKKHSSTCRLFKYQELLRATSNFFADNLIGKGGSSQVYRGCLPDGKEIAVKILKPCEDVLKEFVLEIEIITSLNHKNIISLLGFCYEHNKLLLVYDFLPRGSLEDNLHCELKSNICSLKSGNEKGSGAFGWSERYKAALGLAEALAYLHDDRAQPVIHRDVKSSNVLLSEDFEPQSFFSIGYLAPEYFMHGKVNDKIDVYAFGVVLLELVSGRKPICTDYPKGQESLVMWAEPILNGGKVSQLVDPRLGCKYNKDQMERLVLAASLCIRRAPRARPQMSLVLKLLRGDVEVTKWARLQVDAVDESGMLDDETFPRCHLQSHINLALLDVEDDSVSVSSIEQTISLEDYLRGRWSRSSSLD 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7486709 7489913 - Bma001015.1 Bma01g00797 75314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00797 621 SMART serkin_6 284 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00797 621 PANTHER OS08G0249100 PROTEIN 14 65 - -
Bma01g00797 621 ProSiteProfiles Protein kinase domain profile. 284 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00797 621 PANTHER - 14 65 - -
Bma01g00797 621 PANTHER - 441 604 - -
Bma01g00797 621 PANTHER - 113 436 - -
Bma01g00797 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Bma01g00797 621 Gene3D Transferase(Phosphotransferase) domain 1 359 561 - -
Bma01g00797 621 SUPERFAMILY Protein kinase-like (PK-like) 267 561 IPR011009 -
Bma01g00797 621 Pfam Protein kinase domain 288 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00797 621 Gene3D Phosphorylase Kinase; domain 1 250 358 - -
Bma01g00797 621 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Bma01g00797 621 PANTHER OS08G0249100 PROTEIN 441 604 - -
Bma01g00797 621 PANTHER OS08G0249100 PROTEIN 113 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00797 - - - jre:109004828 653.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00797 Bma-Chr1:7486709 Bma06g00472 Bma-Chr6:22032634 4.53E-12 dispersed
Bma01g00797 Bma-Chr1:7486709 Bma02g00200 Bma-Chr2:2169507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66262 PF00069 Pkinase 4.50E-28 CL0016 Bma PK