Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00803 ATGAATTTCATCGTCCTTCTCTTTTCTGCTTTTTCCTCTTTTTCCTTCGTATTAATTTCTGCTGGTTTCAACCACGGCGCCAATTTCGCCAGCTCCAGCATCGTCTTCTCGACGATTGGTCGATCAAACTACTCCTTCGACATCTTCGCCCTTCCTGCTCTAGGAAATCCTTCAACTTCCGAAGAAATTCAGATCACTGACGGACATTCTGTCAATTACAATGGCCACTTCGCTTCTTCTTCATCAATCTCTGCGCTACTATCGTCTTTTGATAACCAAAACCGACTTCCATCCGGCCCGACATCATTGCAACTCGTCTACGTCACGGAGAGAAACGGATCGTCTAACATTTTCCTTGACGCTGTTTCTTTGGGAAATCATAAAAGCGGGACAAAACGATCCGGTTTCGTAATTGCATCTCGGTCTCAGGTTCCTCTGCTGAGCGAAAATGGAGGTTTGAAAGACAGGCCAATCATTAGCGGTGATTATTTGGTTTATGTTTCGACTCATGAAAGCGCGGCCAAGCCGAGGAAGAGTTGGGCGGCAGTGTACTCAACAAATTTGAAATTACGTCTGACTCAAAGATTGACCCCCTTTGGCGTCGCTGATTTCAGTCCCTCCGTTTCGCCGTCCGGGATGTTGACGGCGGTGGCTTCCTACGGCGAAAGTGGTTGGAACGGTGAGGTCGAGGATCTAAGGACAGATATATACGTTTTCCTGACTCGGGATGGAGCTCAGCGAGTTAAAGTTGTTGAACACGGCGGCTGGCCTTGCTGGGCGGATGAATCGACCTTATATTTTCACCGGCGAGGGACTGATCAGTGGTGGAGTATATACAGAGCAACTCTTCCAAAACAAGGTCTAGTTTCTACCGAGTCAGTTGTGATTGAGCGACTCACCCCACCGGGCTTGCACGCTTTCACTCCAGCTACTTCTCATCAAAACAAGAACTTTATAGCTGTAGCTACGAGACGATCCACTTCCGATTACCGCCATATCGAGCTGTTCGACACCGTCAACGGTGAGTTTAAGGAGCTGACTCGGCTCGTTTCGCCCCAAAGTCATCACTATAACCCGTTCATCTCCCCCGATTCAACACTTATCGGTTACCATAAGTGCCGAGGTGAAAGAATTGGAAGAAAAAGCTCCAAGATCTTGCTGGAAAATATTCAAAGCCCCATTCCCGGCGTTTCTTTATTCAGAATCGATGGTTTCTCCCCGTCTTTCTCGCCGACCGGTGATCGAATCGCCTACGTGAATTTACCAGGCGCCGGCGCTTACGTCGTTAATTCCGACGGGTCGAAACGGCGCCAGATTTTCTCTCAATTCGCCTTCTCGACAGCATGGGATCCAGTACGAAAGGGAGTTGTGTACGCCAGCGCTGGGCCAATTTTGGTTTCGGAAAGCACCGAAGTCGATGTTATCTCCATCAACGTTGACGACGATGACGAATTGAGTTTCAAGAAGTTGACCACCGGCGGCAAAAATAACGCTTTTCCTTCTCCGTCACCCGACGGAAAGTGGGTCGTGTTTCGCTCAGGCCGGACCGGTCATAAGAATTTATACATCATGGATGCGGTAGAGGGAGAAAGCCGCCAGCTCCACCGGCTTACGGAGGGTCCTTGGACGGACACAATGTGCAATTGGTCACCCGACGGGGACTATATCGCATTTGCATCGGACCGGGACAACCCGGGAAGTGGGAGTTTCGAACTATACTTGATCCACCCGAACAAAACCGGGTTAAGAAAGCTAATTCAAAGCGGGTCGAATGGTAAGGCCAACCACCCATGGTTCCGCCCGGATTCAAAAACTGTAGTCTTCACTACGGACTACGCCGCCATATCGGCGGAGCCAATCTCAAACCCAAATCATTTCCAGCCGCACGGTGAGATATTCACCGTTAAACGGGACGGCTCTGGCCTGAGGAGATTGACTCACAACGCCTACGAGGACGGGACTCCCACGTGGGGGCCACGTCACCTCAAGGATGTTGACGTGGAGAGATTAAAAGATGGGCCCCTTTGCCAATTTGATGACTGTCTCTGGCTCAAAGCTCCAGTCTAA 2067 50.07 MNFIVLLFSAFSSFSFVLISAGFNHGANFASSSIVFSTIGRSNYSFDIFALPALGNPSTSEEIQITDGHSVNYNGHFASSSSISALLSSFDNQNRLPSGPTSLQLVYVTERNGSSNIFLDAVSLGNHKSGTKRSGFVIASRSQVPLLSENGGLKDRPIISGDYLVYVSTHESAAKPRKSWAAVYSTNLKLRLTQRLTPFGVADFSPSVSPSGMLTAVASYGESGWNGEVEDLRTDIYVFLTRDGAQRVKVVEHGGWPCWADESTLYFHRRGTDQWWSIYRATLPKQGLVSTESVVIERLTPPGLHAFTPATSHQNKNFIAVATRRSTSDYRHIELFDTVNGEFKELTRLVSPQSHHYNPFISPDSTLIGYHKCRGERIGRKSSKILLENIQSPIPGVSLFRIDGFSPSFSPTGDRIAYVNLPGAGAYVVNSDGSKRRQIFSQFAFSTAWDPVRKGVVYASAGPILVSESTEVDVISINVDDDDELSFKKLTTGGKNNAFPSPSPDGKWVVFRSGRTGHKNLYIMDAVEGESRQLHRLTEGPWTDTMCNWSPDGDYIAFASDRDNPGSGSFELYLIHPNKTGLRKLIQSGSNGKANHPWFRPDSKTVVFTTDYAAISAEPISNPNHFQPHGEIFTVKRDGSGLRRLTHNAYEDGTPTWGPRHLKDVDVERLKDGPLCQFDDCLWLKAPV 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7531907 7533973 + Bma001021.1 Bma01g00803 75320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00803 688 Gene3D - 424 659 IPR011042 -
Bma01g00803 688 Gene3D - 156 389 IPR011042 -
Bma01g00803 688 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 27 680 - -
Bma01g00803 688 SUPERFAMILY DPP6 N-terminal domain-like 161 462 - -
Bma01g00803 688 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 27 680 - -
Bma01g00803 688 SUPERFAMILY DPP6 N-terminal domain-like 405 612 - -
Bma01g00803 688 Pfam WD40-like Beta Propeller Repeat 488 523 IPR011659 -
Bma01g00803 688 Pfam WD40-like Beta Propeller Repeat 548 573 IPR011659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00803 - - - jre:109003048 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00803 Bma-Chr1:7531907 Bma09g00820 Bma-Chr9:46947566 2.15E-161 dispersed
Bma01g00802 Bma-Chr1:7525915 Bma01g00803 Bma-Chr1:7531907 0 tandem
Bma01g00803 Bma-Chr1:7531907 Bma01g00804 Bma-Chr1:7535420 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g228 . . . . . . . . . Cmo15g00667 . . . . Sed03g0428 . . Bhi04g01877 Tan11g1249 Cmetu03g0593 . Hepe02g2220 . Lcy10g1246 Cla08g00617 Cam08g1031 Cec08g0620 Cco08g0732 Clacu08g0741 . Cre08g0549 . . Cone17ag0825 . . . . . . Blo18g00176 . Bda01g01455 Bpe02g01652 . Bma01g00803 . . . . . . . Car15g00607 . . . . . . . . . . . . . . . . Lsi08g00457 . Chy03g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008521 3 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00803 Bma_Chr01 FPKM 58.602985 61.594799 52.576855 56.550205 15.950493 15.214469 18.804396 0.685744 0.797504 1.055642