Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00807 ATGGCTGAAGTGATCTCTCCAATGGACGTCGATAACGATAACTACAACCATTCTCTCAAGCCTGGCAAGGGTAAAAATGTTGTCGTTTCAGGCACTCCAACCGACGGCAAAGCCACACCCTGGGTTGAGAAATACCGACCTCAGTCTCTTGCTGATGTCGCTGCCCATCGTGATATTGTCGACACCATTGATATGCTTACCAGCGAGAATAGGTTGCCACATCTCCTGTTATATGGCCCTCCAGGCACTGGTAAGACATCAACTACTCTTGTTGTTGCACGTAAGCTTTATGGAGTACTCTACCACAATATGATATACCTGCATTACTGTGCCTTTTCCGTTTTGTTTTCACTGAGTTTCTTTTATTTCTCTTTTACACCAGTACATCATGTCAATAATATTATTCCAGCCCTGCAATCAAGGTGCGCGCACTTTCGATTCGCTCCCCTTGATAACTTCCATGTTAACGGTCGACTCAAATATGTTATAGAAGCTGAAATGCTTGATGTCCCTGAGAAAGGTTTCGCAGCACTTGTTCGTCTTAGCAATGGTGACATGAGAAAGGCACTGAATATTCTGCAGTCAACACACATGGCTTCTAATCAGATAACAGAAGAAGCTGTCTACTTGTGCACTGGAAATCCAATGCCCAAGGCCATAGAGCAAATATCTTACTGGCTTCTGAATGAACCGTTTGCAGAAAGTTTTAGAAGAATATCTGAAATCAAGACAAAGAAAGGACTGGCCTTGGTTGATATTGTGAGAGAAGTGACCATATTCGTTTTTAAAATGAAGATGCCGTCAGATGTTCGAGTTCCATTGATATATGATTTGGCTGACATTGAGTATGTATCTATGTCAACCTTTACTCTTTTACCTTCACTATTGTCGTACTTTTACTCTTTTATCTGA 912 41.78 MAEVISPMDVDNDNYNHSLKPGKGKNVVVSGTPTDGKATPWVEKYRPQSLADVAAHRDIVDTIDMLTSENRLPHLLLYGPPGTGKTSTTLVVARKLYGVLYHNMIYLHYCAFSVLFSLSFFYFSFTPVHHVNNIIPALQSRCAHFRFAPLDNFHVNGRLKYVIEAEMLDVPEKGFAALVRLSNGDMRKALNILQSTHMASNQITEEAVYLCTGNPMPKAIEQISYWLLNEPFAESFRRISEIKTKKGLALVDIVREVTIFVFKMKMPSDVRVPLIYDLADIEYVSMSTFTLLPSLLSYFYSFI 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7547519 7550560 - Bma001025.2 Bma01g00807 75324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00807 303 Gene3D - 19 114 IPR027417 -
Bma01g00807 303 Pfam Replication factor C C-terminal domain 215 283 IPR013748 -
Bma01g00807 303 SUPERFAMILY post-AAA+ oligomerization domain-like 215 297 IPR008921 GO:0003677|GO:0006260
Bma01g00807 303 CDD HLD_clamp_RFC 154 212 - -
Bma01g00807 303 Gene3D - 215 300 - -
Bma01g00807 303 Gene3D - 154 214 - -
Bma01g00807 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 208 IPR027417 -
Bma01g00807 303 Pfam Rad17 P-loop domain 37 101 - -
Bma01g00807 303 CDD AAA 59 104 - -
Bma01g00807 303 PANTHER REPLICATION FACTOR C SUBUNIT 5 34 105 - -
Bma01g00807 303 PANTHER REPLICATION FACTOR C SUBUNIT 5 129 285 - -
Bma01g00807 303 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 105 - -
Bma01g00807 303 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 129 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00807 Bma02g00213 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00807 Bma-Chr1:7547519 Bma05g00808 Bma-Chr5:45416612 4.26E-25 dispersed
Bma01g00807 Bma-Chr1:7547519 Bma01g02668 Bma-Chr1:84176956 2.85E-13 wgd
Bma01g00807 Bma-Chr1:7547519 Bma02g00213 Bma-Chr2:2279343 2.77E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00807 K10756 - gmx:100805231 360.533