Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00814 ATGGCGGAAAAATCAAAAAAATCGCCATTATCGCTACCCAAAAGCTGCAAGAAGAAATACAAGGGAGTGAGAATGAGAAGCTGGGGTTCATGGGTGTCTGAAATAAGAGCTCCAAATCAAAAAACAAGAATCTGGTTAGGTTCTTATTCTACTCCAGAAGCAGCAGCTAGGGCTTATGACGCTGCCCTTTTATGCCTCAGAGGATCTTCTGCAAATCCTAATCTCAATTTTCCTATCTTTTCTTCGTCGTCTTCTTCTTGTTTTGATTCTGTCGTATCCCAGAAAAACTCCATTGTTATGTCTCCGAAGTCCATCCAAAGAGTTGCAGCTGCTGCAGCCAACACTTGGGTTGAAGAGAGAGAAAACTCTATTAGCACTCTAGCTTCGTCTTCTTCATCCCCATCAAATTCCAATCTCCATGACGAGCATGAATTTTCTACGATATCAACTTCCGAGTCGCACAGTATGTTTCATCAGGGCATTGGATCAACGACCGTGATGGAATCATGGGACTTCTTCGACGGTCCACAATCGCCGAAATATGTTGACCAATTGATCAGTGGTGCCTTGGTCGACCCACATCTGGCTATGGTGGATGAATTTTACGAAGAAAGTGATATTCGTTTATGGAGTTTCTGTTGA 642 42.99 MAEKSKKSPLSLPKSCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLRGSSANPNLNFPIFSSSSSSCFDSVVSQKNSIVMSPKSIQRVAAAAANTWVEERENSISTLASSSSSPSNSNLHDEHEFSTISTSESHSMFHQGIGSTTVMESWDFFDGPQSPKYVDQLISGALVDPHLAMVDEFYEESDIRLWSFC 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7691499 7692140 - Bma001032.1 Bma01g00814 75331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00814 213 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Bma01g00814 213 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Bma01g00814 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 13 213 - -
Bma01g00814 213 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Bma01g00814 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 213 - -
Bma01g00814 213 SMART rav1_2 19 84 IPR001471 GO:0003700|GO:0006355
Bma01g00814 213 ProSiteProfiles AP2/ERF domain profile. 19 78 IPR001471 GO:0003700|GO:0006355
Bma01g00814 213 CDD AP2 18 79 IPR001471 GO:0003700|GO:0006355
Bma01g00814 213 Gene3D AP2/ERF domain 18 80 IPR036955 GO:0003700|GO:0006355
Bma01g00814 213 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00814 Bma-Chr1:7691499 Bma02g00222 Bma-Chr2:2360587 8.79E-89 dispersed
Bma01g00814 Bma-Chr1:7691499 Bma01g00826 Bma-Chr1:7771663 7.70E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56678 PF00847 AP2 9.30E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00814 - - jre:108988309 193.741