Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00816 ATGGCGAATCAAAGACCCAGCTTCGACTGTATTTTCGGATTCTTCTTCTTCTTCCTTTTTGTTGGGCCGTTGTTTTTCTGCAATATAGCTCTCGTAAGCTCCAAATCAACCATCGAGCCCTGCTCTAACTCCGACTCTTGCAATGCCTTACTCGGCTACACTCTCTACACGGACCTGAAGGTCTCTGAGGTCGCGTCTCTCTTCCAAGTCGACCCAATTTCTATTCTAACCGCCAATGCCATTGACATTTCTTATCCAGACGTAGAGAATCACATTCTTCCGTCTCAACTCTTCCTCAAAATCCCCGTCAGCTGTTCCTGCACCGACGGAATACGAAAATCCGTTTCCACCCACTACAAGACCCGCCCCTCCGATACTCTTTCCTCCATAGCTGATTCGGTGTATTCTGGTTTGGTATCCGCCGACCAGATTCGTGAGGCTAATTCAATTTCTGATCCTTCTGTTCTGGACGTGGGTCAAAACCTCGTTGTGCCATTACCTTGTACTTGTTTCAACGGGACAGATAATTCCTTGCCTGCGATTTACTTGTCGTATGTAGTGAATCCTGTCGATACATTGGCTGGAATTGCCGCTACGTATTCAACGACGATTTCTGATTTGATGAATGTAAATGCGTTGGGAAGCACATCTATTACGCCTGGTGATATTCTAGCTGTTCCATTACCAGCTTGTGCATCGAGTTTCCCTCGTTATGCATCTGATTCCGGCTTGATCGTGCCTAATGGGAGTTATGCGATTACTGCTAGTCATTGTGTGCAATGCAGTTGCGGCCCGGGAAACCTTAACTTGTACTGCATGCCTGCATCTTTAGCAGTTTCTTGTTCAAGCATGCAATGTAAAAACAGCAATCTCATGCTCGGAAATGTGACGACTCAAGCAAGTAGCGCAGGCTGCAATGTTACTTCCTGTAGTTATGGTGGTTTCGTAAATGGCACCATAATCACGACATTGTCCTCTTCTCTTCAACCCAGATGCCCGGGAAAACAGCAATTTCCACCACTTGTAGTTCCACCATCGTCCTTGACTAAGAATTCGCCTTTTGCTCCGTCGCCATCGCCTCAATCAGAGAGCGGAGGACCGAGTTCTCCAAAAACCACAGTTCCATCTTCGAGCAGCTCCTTTCCCGGCTTCTCCCCTGCAAACGGCCCCACAGGCAGTGCCTCTCAAGGGAGTAGTCCTTCCGCAGCTTCCAGGCCGAAACCATTTGATGGATTCTCTTATATTCTTCTCTTCTCATCTATGTTTATCAAACTCATCTTTTCCACTTCCTTCTGA 1296 47.15 MANQRPSFDCIFGFFFFFLFVGPLFFCNIALVSSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDISYPDVENHILPSQLFLKIPVSCSCTDGIRKSVSTHYKTRPSDTLSSIADSVYSGLVSADQIREANSISDPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVNPVDTLAGIAATYSTTISDLMNVNALGSTSITPGDILAVPLPACASSFPRYASDSGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQASSAGCNVTSCSYGGFVNGTIITTLSSSLQPRCPGKQQFPPLVVPPSSLTKNSPFAPSPSPQSESGGPSSPKTTVPSSSSSFPGFSPANGPTGSASQGSSPSAASRPKPFDGFSYILLFSSMFIKLIFSTSF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7699677 7702063 - Bma001034.1 Bma01g00816 75333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00816 431 ProSiteProfiles LysM domain profile. 117 164 IPR018392 -
Bma01g00816 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 31 368 - -
Bma01g00816 431 SMART LysM_2 118 165 IPR018392 -
Bma01g00816 431 SMART LysM_2 184 227 IPR018392 -
Bma01g00816 431 SUPERFAMILY LysM domain 117 166 IPR036779 -
Bma01g00816 431 CDD LysM 117 164 IPR018392 -
Bma01g00816 431 CDD LysM 184 226 IPR018392 -
Bma01g00816 431 Gene3D LysM domain 113 174 IPR036779 -
Bma01g00816 431 MobiDBLite consensus disorder prediction 349 403 - -
Bma01g00816 431 Pfam LysM domain 185 227 IPR018392 -
Bma01g00816 431 Pfam LysM domain 119 165 IPR018392 -
Bma01g00816 431 ProSiteProfiles LysM domain profile. 183 226 IPR018392 -
Bma01g00816 431 SUPERFAMILY LysM domain 183 228 IPR036779 -
Bma01g00816 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 31 368 - -
Bma01g00816 431 MobiDBLite consensus disorder prediction 349 405 - -
Bma01g00816 431 Gene3D LysM domain 183 228 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00816 - - - qsu:112025176 605.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00816 Bma-Chr1:7699677 Bma08g00724 Bma-Chr8:43058139 4.21E-29 dispersed
Bma01g00816 Bma-Chr1:7699677 Bma01g00824 Bma-Chr1:7761696 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00816 . 33 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.2 4.0e-155 544.7
Bma01g00824 . 33 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.2 1.5e-154 542.7
Bma01g00816 . 30 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.4 6.9e-139 490.7
Bma01g00824 . 30 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.4 1.2e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00816 Bma_Chr01 FPKM 2.583868 2.328275 0.0 0.0 1.659606 1.308194 1.555883 0.500784 0.0 0.258761