Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00819 ATGTCAAATGATTTAACTATTAAAGAGGGTGTTGATGGAGATCTGGCCACAGAAGAAGATTTGAACAATAATGTGCAAAGTCTCTCAGAAAAGCTATCAGCTGCGCTTATGAATGTTCGTGCAAAAGAAGATTTGGTGAAGCAACATGCCAAAGTTGCTGAAGAAGCTATTGCCGGCTGGGAAAAGGTAGAAAATGAAGTGATAGTATTAAAACAACAACTTGGGTCTGCAATTAAGCAAAAGTCAGCATTGGAAGATCAGGTGAGCCATCTTGATGCTGCCCTGAAGGAATGCGTTAGGCAACTAAGACAAACTAGAGATGAACAAGAGCAAAAGATCCAGGAAGCAGTGAAAGATAAAATCAATGATTTTGAATCTGCCAGACTGGATCTTGAGCAGCAGCTTCTTGAGATTCAAACCAAAGCAAAAGCTGCTCATAAAAAATCTGCTCATACTAATCTCGAACTTTCCAACAAGATTGAATCCTTGGAAAAAGAAAATTCAGCCCTCAAGCACGAGCTTTATGCGCAGTCCGAGGAGCTTGAAATCCGGACGATTGAGAGAGATTTAAGCACACAAGCAGCTGAAACTGCTAGCAAGCAGAGTCTAGAAAACTTAAAGAAGGTAGCCAGGCTTGAGGCTGAATGCAGAAGACTAAAAACCAGAGCCACTCCACCTTCCTCCACTTACGTCGAATCTCTCACTGATAGTCAATCAGATGGTGGAGAGCGTTTGACTGCTGTGGATATTGACACTCATAAGATCCAATTTAAGAATGAAAAGGGTACTGTCAGTAATCTACCTTCTTCCAGTGAAATATCTCTCATGGACGATTTTCTCGAGATGGAACGGCTTGCTGCCATGCCTGACTCTGAAACTGGAGATGTTTGCGTAGGATCAGAAGCCATGGATGAAGCCATTGCCAGAGAAAGTTCCCTGAGAGTTGAAATTGAGACATTGATGTCACAGACGATGGAAATGGAAGAGAAGCTAGAGAAGATGGAAGATTTGAATGCTGAACTAGAAGAGAAGTTGGGCAAGATGAAAGAAGAGAAAGACGAACTGGAACAGAAGTTAGAAAAGATGAAAGAAGAGAAAGACGAACTGGAAAACAGGTTAGAAGAGATGAAAGAAGAGAACCATGAGCTAGAAGAGAAGTTTGAGAAAATAAACACAGACAAAGCTGATATGGAGATTTCTCTTGACAAAAGTAAAGGCAGCATTAAGAAATCAGAGCTTCAGCTGAAGGAAGCAGAAAAAAAGATGGAAGAGCTCCAAAAGGAGCTAATTATTGCAAATGACTCAAAACAAAGTATGGAAGCTCTACTAGGAAGTGTGGAAGCCGAGTCTCAAACCCTGTCGGAAAAGTTTATTTCGCTGGAACATGAAGTCGAGAAGGAGAGACTTTTTTCGGAGGAAATGAAAATCCAGTGCCATGAACTAGAGGAGGAACTGATTAGAATGAAAGAAGATAAAATCAGGCAAATGACAAATAAAGAGCCAAAGATAAAGCAGGAAGACTTGGCTGCGGCAGCCGGAAAACTAGCCGAGTGTCAAAAGACGATAGCATCCCTCGGGAATCAACTCAAATCTCTAGCAACATTAGACGACTTTCTAACCGACACGTCATCAGTAGCGAAACTCTCCGAAGGTATAAGCCTACTTTCGAAAGCTGGTGTTCACAAGCACCAACAGTCAAATGGATCGCTTTCGCCGAAAAGAGTGGATTACTTAGAAGTAGTTGATGTTACTCCAAATAGTAGGAGTGAAGATGACTCTCCACCTTCATCGACATCTTCCTCGGCTTCATCAGTTTTAGTGTCGGCTCATGTTAGTTCGGAGAAAAACCGAAACGGGTTTGCCAAGTTTTTCTCGAGGACTAAGAGTGGAATAAGACTGGAGATTTAG 1908 41.82 MSNDLTIKEGVDGDLATEEDLNNNVQSLSEKLSAALMNVRAKEDLVKQHAKVAEEAIAGWEKVENEVIVLKQQLGSAIKQKSALEDQVSHLDAALKECVRQLRQTRDEQEQKIQEAVKDKINDFESARLDLEQQLLEIQTKAKAAHKKSAHTNLELSNKIESLEKENSALKHELYAQSEELEIRTIERDLSTQAAETASKQSLENLKKVARLEAECRRLKTRATPPSSTYVESLTDSQSDGGERLTAVDIDTHKIQFKNEKGTVSNLPSSSEISLMDDFLEMERLAAMPDSETGDVCVGSEAMDEAIARESSLRVEIETLMSQTMEMEEKLEKMEDLNAELEEKLGKMKEEKDELEQKLEKMKEEKDELENRLEEMKEENHELEEKFEKINTDKADMEISLDKSKGSIKKSELQLKEAEKKMEELQKELIIANDSKQSMEALLGSVEAESQTLSEKFISLEHEVEKERLFSEEMKIQCHELEEELIRMKEDKIRQMTNKEPKIKQEDLAAAAGKLAECQKTIASLGNQLKSLATLDDFLTDTSSVAKLSEGISLLSKAGVHKHQQSNGSLSPKRVDYLEVVDVTPNSRSEDDSPPSSTSSSASSVLVSAHVSSEKNRNGFAKFFSRTKSGIRLEI 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7735307 7737756 - Bma001038.1 Bma01g00819 75336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00819 635 Coils Coil 317 442 - -
Bma01g00819 635 MobiDBLite consensus disorder prediction 587 613 - -
Bma01g00819 635 Coils Coil 95 141 - -
Bma01g00819 635 MobiDBLite consensus disorder prediction 362 383 - -
Bma01g00819 635 MobiDBLite consensus disorder prediction 223 242 - -
Bma01g00819 635 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 16 634 - -
Bma01g00819 635 Coils Coil 146 180 - -
Bma01g00819 635 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 16 634 - -
Bma01g00819 635 Coils Coil 471 499 - -
Bma01g00819 635 MobiDBLite consensus disorder prediction 585 613 - -
Bma01g00819 635 Coils Coil 18 38 - -
Bma01g00819 635 SUPERFAMILY Tropomyosin 326 495 - -
Bma01g00819 635 Pfam Filament-like plant protein, long coiled-coil 146 220 IPR008587 -
Bma01g00819 635 Pfam Filament-like plant protein, long coiled-coil 42 141 IPR008587 -
Bma01g00819 635 Pfam Filament-like plant protein, long coiled-coil 378 534 IPR008587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00819 - - - csv:101206243 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00819 Bma-Chr1:7735307 Bma09g00402 Bma-Chr9:33747941 8.49E-103 dispersed
Bma01g00819 Bma-Chr1:7735307 Bma01g02360 Bma-Chr1:81300545 2.47E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00819 Bma_Chr01 FPKM 26.565542 27.201368 27.39176 34.737282 53.233524 42.946033 45.44915 39.118717 48.493298 48.051075