Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00824 ATGACGAATCAAAGACCCAGCTTCGACTGTATTTTCGGATTCTTCTTCTTCTTCCTTTTCGTTGGGCCGTTGTTTTTCTGCAATATAGCTCTCGTAAGCTCCAAATCAACCATCGAGCCCTGCTCAAACTCCGATTCTTGCAATGCCTTACTCGGCTACACTCTCTACACGGACCTGAAGGTCTCTGAGGTCGCGTCTCTCTTCCAAGTCGACCCAATTTCTATTCTAACCGCCAATGCCATTGACATTTCTTATCCAGACGTAGAGAATCACATTCTTCCGTCTCAACTCTTCCTCAAAATCCCCATCAGCTGTTCCTGCACCGACGGAATACGAAAATCCGTTTCCACCCACTACAAGACCCGCCCCTCCGATACTCTTTCCTCCATAGCTGATTCGGTGTATTCTGGTTTGGTATCCGCCGACCAGATTCGTGAGGCTAATTCAATTTCTGATCCTTCTGTTCTGGACGTGGGTCAAAACCTCGTCGTGCCATTACCTTGTACTTGTTTCAACGGGACAGATAATTCCTTGCCAGCAATTTACTTGTCGTATGTAGTGAATCCTGTCGATACATTGGCTGGAATTGCCGCTACGTATTCAACTACGATTTCTGATTTGATGAATGTTAATGCGTTGGGAAGCACATCTATTACGCCTGGTGATATTCTAGCTGTTCCATTACCAGCTTGTGCATCGACTTTCCCTCGTTATGCATCTGATTCCGGCTTGATCGTGCCTAATGGGAGTTATGCGATTACTGCTAGTCATTGTGTGCAATGCAGTTGCGGCCCGGGAAACCTTAACTTGTACTGCATGCCTGCATCTTTAGCTGTTTCTTGTTCAAGCATGCAATGTAAAAACAGCAATCTCATGCTCGGAAATGTGACGACTCAAGCAAGTAGCGCAGGCTGCAATGTTACTTCCTGTAGTTATGGTGGTTTCGTAAATGGCACCATAATCACGACATTGTCCTCTTCTCTTCAACCCAGATGCCCGGGAAAACAGCAATTTCCACCGCTTGTAGTTCCACCTTCGTCCTTGACTAAGAATTCGCCTTTTGCTCCGTCGCCATCGCCTCAATCAGAGAGCGGAGGACCGCGTTCTCCAAAAACTACAGTTCCATCTTCGAGCAGCTCCTTTCCTGGCTTCTCCCCTGCAAACGGCCCCACAGGCAGTGCCTCTCAAGGGAGTAGTCCTTCCGCAGCTTCCAGGCCGAAACCATTTGATGGATTCTCTGATATTCTTCTCTTCTCATCTGTGTTTATCAAACTCATCTTCTCCACTTCCTTCTGA 1296 47.15 MTNQRPSFDCIFGFFFFFLFVGPLFFCNIALVSSKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDISYPDVENHILPSQLFLKIPISCSCTDGIRKSVSTHYKTRPSDTLSSIADSVYSGLVSADQIREANSISDPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVNPVDTLAGIAATYSTTISDLMNVNALGSTSITPGDILAVPLPACASTFPRYASDSGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTTQASSAGCNVTSCSYGGFVNGTIITTLSSSLQPRCPGKQQFPPLVVPPSSLTKNSPFAPSPSPQSESGGPRSPKTTVPSSSSSFPGFSPANGPTGSASQGSSPSAASRPKPFDGFSDILLFSSVFIKLIFSTSF 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7761696 7764084 + Bma001043.1 Bma01g00824 75341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00824 431 ProSiteProfiles LysM domain profile. 117 164 IPR018392 -
Bma01g00824 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 31 367 - -
Bma01g00824 431 Gene3D LysM domain 183 228 IPR036779 -
Bma01g00824 431 SMART LysM_2 118 165 IPR018392 -
Bma01g00824 431 SMART LysM_2 184 227 IPR018392 -
Bma01g00824 431 Gene3D LysM domain 113 174 IPR036779 -
Bma01g00824 431 SUPERFAMILY LysM domain 117 166 IPR036779 -
Bma01g00824 431 CDD LysM 117 164 IPR018392 -
Bma01g00824 431 CDD LysM 184 226 IPR018392 -
Bma01g00824 431 MobiDBLite consensus disorder prediction 349 403 - -
Bma01g00824 431 ProSiteProfiles LysM domain profile. 183 226 IPR018392 -
Bma01g00824 431 Pfam LysM domain 185 227 IPR018392 -
Bma01g00824 431 Pfam LysM domain 119 165 IPR018392 -
Bma01g00824 431 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 31 367 - -
Bma01g00824 431 SUPERFAMILY LysM domain 183 228 IPR036779 -
Bma01g00824 431 MobiDBLite consensus disorder prediction 349 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00824 - - - qsu:112025176 618.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00824 Bma-Chr1:7761696 Bma08g00724 Bma-Chr8:43058139 7.57E-29 dispersed
Bma01g00816 Bma-Chr1:7699677 Bma01g00824 Bma-Chr1:7761696 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g278 . . . . . . . . Cmo04g02467 Cmo15g00697 . . . . Sed03g0791 . . Bhi04g01920 Tan11g1285 Cmetu03g0754 . Hepe02g2277 . Lcy10g1221 Cla08g00584 Cam08g0999 Cec08g0588 Cco08g0698 Clacu08g0708 . Cre08g0519 Cone4ag1398 Cone7ag1539 . . . . . Cme03g00571 . Blo18g00186 . Bda01g01423 Bpe02g01637 . Bma01g00824 . . . . . . Car04g02284 Car15g00629 Cpe01g02046 . . . . . . . . . . . . . . . Lsi08g00430 . Chy03g00813 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00816 . 33 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.2 4.0e-155 544.7
Bma01g00824 . 33 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.2 1.5e-154 542.7
Bma01g00816 . 30 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.4 6.9e-139 490.7
Bma01g00824 . 30 400 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.4 1.2e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00824 Bma_Chr01 FPKM 3.677966 4.240014 8.007144 9.388105 4.40948 3.936199 5.323714 5.175812 5.51074 5.387444