Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00825 CTCTCCTCCATGGCCAGACCTTACTGTAACGCCATGGCTGTTAATGTTATTCTGCCTCTGCTGCTTTCATTCCCTTTGCTTCGCACTTACGCTTTGGACCTTAACGATGACTCCCATGATTCCCCCATTTCTCGCTTCCAGCGCTATCTGAGAATCAACACTGCCCACCCCAATCCTGATTACTCTTCTGCTGTCTCCTTCCTCAACTCCCAAGCACTCTCTCTTGGCCTCCATAGCCAGACGCTGGAGTTCGCTTCTGGGAAACCCCTTCTTCTCTTAACCTGGTATGGCTCCGACCCTTCTCTACCTTCTATTTTGTTCAACTCTCACATCGATTCCGTCCCCGCCGAGCCTTCCAAGTGGCTACACCCTCCCTTCTCCGCGTTCTTGTCGTCCGACGGAAAGATTTTTGCCCGGGGTTCACAGGATGACAAGTGTATTGGCATTCAGTACCTCGAGGCAATCCGAAACCTGAAACGACGAAATTTCGCTCCACTTCGAACGATTCATGTTTCATATGTGCCAGACGAGGAGATTGGTGGCTTCGATGGGGCTATGAAGTTCACCGCCTCGAAGCATTTCAAGGATTTGATTATCGGTTTTTTATTGGACGAAGGTCAGGCTTCTCTCAACGATGAGTTTCGCGTCTTCTATGCGGATAGAACTCCATGGGGGCTGAAAATTAAAGCCAATGGAACACCCGGGCCTGGTTCCAGAATGTACGACAACAGTGCAATGGAGAATTTGATGAAGAGCATTGAGGTTGTGAGTAAGTTTAGGGAGAGTCAATTTGATATTGTTAAGGCGGGTGAAGCTGCCAATTCGGAGGTTGTCTCAGTCAATTCTGTCTATGTCAATGCCGGAATTCCCTCTCCTACTGGTTTTTTGATGAATATGCAACCTTCTGAAGCAGAAGCAGGTTTTGATCTCAGATTGCCTCCCATGGCAGACCCGGATCTTATTAAAAGAAGAATTGCAGAAGAATGGGCTCCAGCCCGAAGGAACATGACATTCCAGATTATTGAAAAGGGTCCCATGAGAGACAATATGGGGCGTCCCTTAATGACACCTACGAATAACTCTAATCCATGGTGGCTCGTTTTTGAGAAAGCAATCAAAGATGCAGGAGGAAAGCTTTCTAAGCCGGAAATCCTTGCTTCCACTACAGATGCTCGGTACGTGAGACAGTTGGGAATTCCTGCGCTCGGCTTCTCACCAATGAAGAATACTCCAATTTTACTTCATGACCACAATGAGTTCCTCACTGATACCATCTTCTTGGAGGGCATAAAGGTTTATGAATCCATAATCAGTGCTTTGAGTTCCTTCAAAGAAACATCTTAA 1344 47.02 LSSMARPYCNAMAVNVILPLLLSFPLLRTYALDLNDDSHDSPISRFQRYLRINTAHPNPDYSSAVSFLNSQALSLGLHSQTLEFASGKPLLLLTWYGSDPSLPSILFNSHIDSVPAEPSKWLHPPFSAFLSSDGKIFARGSQDDKCIGIQYLEAIRNLKRRNFAPLRTIHVSYVPDEEIGGFDGAMKFTASKHFKDLIIGFLLDEGQASLNDEFRVFYADRTPWGLKIKANGTPGPGSRMYDNSAMENLMKSIEVVSKFRESQFDIVKAGEAANSEVVSVNSVYVNAGIPSPTGFLMNMQPSEAEAGFDLRLPPMADPDLIKRRIAEEWAPARRNMTFQIIEKGPMRDNMGRPLMTPTNNSNPWWLVFEKAIKDAGGKLSKPEILASTTDARYVRQLGIPALGFSPMKNTPILLHDHNEFLTDTIFLEGIKVYESIISALSSFKETS 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7764850 7767593 + Bma001044.1 Bma01g00825 75342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00825 447 Gene3D - 226 335 - -
Bma01g00825 447 PANTHER AMINOACYLASE-1 28 446 - -
Bma01g00825 447 Pfam Peptidase family M20/M25/M40 106 438 IPR002933 GO:0016787
Bma01g00825 447 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 38 443 IPR010159 GO:0004046|GO:0005737|GO:0006520
Bma01g00825 447 PIRSF ACY-1 33 445 - -
Bma01g00825 447 Gene3D Zn peptidases 33 225 - -
Bma01g00825 447 PANTHER PUTATIVE-RELATED 28 446 - -
Bma01g00825 447 Gene3D - 362 443 - -
Bma01g00825 447 SUPERFAMILY Zn-dependent exopeptidases 33 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00825 K14677 ACY1; aminoacylase [EC:3.5.1.14] - vvi:100257526 665.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00815 Bma-Chr1:7696153 Bma01g00825 Bma-Chr1:7764850 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g289 . . . . . . . . Cmo04g02462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00187 . Bda01g01422 Bpe02g01636 . Bma01g00825 . . . . . . Car04g02280 . Cpe01g02042 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010544 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00825 Bma_Chr01 FPKM 10.906265 11.521187 11.59896 11.615451 13.565429 12.753937 13.623224 12.400427 11.004756 10.643182