Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00827 ATGGATTTAGCCATGGAGAATTCCGGCTGGGATCACCAAAACTTATCTGGGTATAGTTCTGGTAGCAGAACCACCATTGAAGAGGGAGTTGATGGTCACAACTGGACTAGCAACTGGTCGCCCATGGTGGATTGGGATACTTTCTCTGCTTGTCAAGACGATGACTTCAAAGACTTTATGGAATCCATTTTTGAGGAAGAGCGAGTTTACCCTCCATCTTCAAGCAACTGCAATTCTTCGGGTTCGAGTACAGAGATGATGTTGGTGGAGGATCAGGAAGAAACTGCCATTAATGGAGGAGGAGAAGATGTCAAAGGGTTGAGACTGGTTCACCTCCTGATCGCCGCCGCCGAGGCCATCATCGGATTCGGAGCTAACGAACGACGGGAGCTTGCTCGGGTGATTTTGGTTCGGCTGAAAGAGTTGGTCTCTCTCTCCGACGGAACCACCATGGAAAGGCTTGCTGCGTATTTCACCGAAGCTTTGTACGGTTTGCTAGAGGGAACCCGGCTCAGTTCCGGTTCAAACAGTAGGTCCCACAACCGGTTCATTACTTGTGGACCCCACATCCATGATCAGAATCCAACGGACGCGATCGCAGCTTTTCAGCTTCTTCAAGATATGTCACCCTACGTCAAGTTCGGTCATTTCACGGCCAATCAAGCGATTCTTGAAGCAGCGGGTGACGATCGGAGGGTCCACATTGTGGATTATGATATCATGGAGGGGATCCAATGGGCGTCGTTGATGCAAGCGTTGGTGTCTAGGAAAGACGGCACGCTCGCGCCGCATCTTAGAATTACCGCGCTATCGAGAAGTGGGACCGCGCGAAGTTCAATCGGGACCGTGCAAGAAACAGGCCGCCGTCTAATTGCATTCGCGGCGTCGATCGGTCAGCCGTTTTCGTTTCATCAGTGTAGACTGGATTCCGAGGAGACATTTCGACCGTCCGCTTTGAAGCTAGTCAAAGGAGAAGCGTTGATCATAAACTGCATGCTCCACCTCCCTCATTTCAACTACCGGGCACCCGATTCGGTGGCTTCGTTTCTCTCCGGATCCAAGACCCTCAACCCGAGACTGGTCACTCTGGTGGAAGAAGAAGTGGGACGCACGGACGGGACCTTTGCGTCTCGATTTATGGACTCATTTCACCATTACTGCGCCATCTACGACTCTCTTGAAGCTGGTTTTCCGATGAATTACCCTGCTCGAGCTCTGGTGGAGCGAGTGTTCATGGGTCCTCGGATATCCGGGACGCTGAGCCGGATCTACCGGGCCAGAGAGGACGAAGAACAAGGATCGTGGGGGGACTGGTTGGGTGCAGCGGGGTTTAGATCAGAGAGAATAAGCTTTGCCAATCACTGCCAAGCAAGACTGTTGGTGGGGCTGTTCAACGAGGGGTATATAGTGGAGAATTTGGGTGAGAATAGGCTTGTTTTAGGATGGAAATCAAAGCGTTTGCTCTCTGCGTCTGTTTGGACGTCTCCTTCTTCTTAA 1497 51.57 MDLAMENSGWDHQNLSGYSSGSRTTIEEGVDGHNWTSNWSPMVDWDTFSACQDDDFKDFMESIFEEERVYPPSSSNCNSSGSSTEMMLVEDQEETAINGGGEDVKGLRLVHLLIAAAEAIIGFGANERRELARVILVRLKELVSLSDGTTMERLAAYFTEALYGLLEGTRLSSGSNSRSHNRFITCGPHIHDQNPTDAIAAFQLLQDMSPYVKFGHFTANQAILEAAGDDRRVHIVDYDIMEGIQWASLMQALVSRKDGTLAPHLRITALSRSGTARSSIGTVQETGRRLIAFAASIGQPFSFHQCRLDSEETFRPSALKLVKGEALIINCMLHLPHFNYRAPDSVASFLSGSKTLNPRLVTLVEEEVGRTDGTFASRFMDSFHHYCAIYDSLEAGFPMNYPARALVERVFMGPRISGTLSRIYRAREDEEQGSWGDWLGAAGFRSERISFANHCQARLLVGLFNEGYIVENLGENRLVLGWKSKRLLSASVWTSPSS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7783135 7784631 - Bma001047.1 Bma01g00827 75344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00827 498 ProSiteProfiles GRAS family profile. 100 494 IPR005202 -
Bma01g00827 498 PANTHER SCARECROW-LIKE PROTEIN 26 30 494 IPR030028 -
Bma01g00827 498 MobiDBLite consensus disorder prediction 9 23 - -
Bma01g00827 498 MobiDBLite consensus disorder prediction 1 23 - -
Bma01g00827 498 Pfam GRAS domain family 109 494 IPR005202 -
Bma01g00827 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 494 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00827 - - - cit:102620887 618.616
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00827 Bma04g00395 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00827 Bma-Chr1:7783135 Bma14g01407 Bma-Chr14:26610798 2.11E-58 dispersed
Bma01g01758 Bma-Chr1:58418908 Bma01g00827 Bma-Chr1:7783135 3.19E-23 dispersed
Bma01g00827 Bma-Chr1:7783135 Bma14g00583 Bma-Chr14:6329094 7.61E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1387 . . . . . . . . Blo18g00188 . Bda01g01419 Bpe02g01634 . Bma01g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1264 . . . . . Bpe04g00384 Bma04g00395 . . . . Cma09g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00827 . . . . . . . Car09g01099 . . . . . . . . . . . . . . . . . . Chy03g00283 Cme01g00709
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011232 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56680 PF03514 GRAS 1.50E-96 CL0063 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00827 Bma_Chr01 FPKM 14.685823 12.268615 22.907602 23.510477 8.404475 3.674129 7.479462 25.714722 27.303318 37.759415