Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00828 ATGATCGAGAGAGTCGATAATGGCGATAAGGAGAAGAAGAAGAAGCGCCGATCTACTCGTCGATCTAAGCAGAGCGCCTCTTCTCTTACATCGGCATCTTGTGGTTCAATCAATGAAATAAATGGGGCGGCCTCAGCGTGCTTAAAAAATGTCAGAATAGTTAACCATGGGGCAGGACCTTTGAATGATCCTTCTTTAAAAGAATGTACAGTTGACACTCTCTCTCCCGTTGATGATGGGCCGACAAGTGAAATCAATGTTTCTTTTAGTTCTCTGCCAACTATGTACATCAGTGAACAAGGGGATATACCGGAGATACAAATCTCAAAAAATCAACACCTTTCTTCTAATGACAGTGGAAGTGTAGTTTCAAAATCATGTTCTCAACTTGATCAAGGGGTAATAATGGACTCTCAAATCGCAAAAAATGAGTGTGTTTCTTCTAATGGTCATGGAAGTGCACAGTCAAAATCCCATTCCAGTGATATTGGCTATCTTGGACCATATACAAATAATTGTTTATCTCCTTCAAATCAAGTTGATGGTCATACTCGAAAGAAATATTTTTCTCCACACTGGTCCATGGATGCTATTAATGGGGCTATTCAGGTCTGTCAGAAACCCTGTTTAAATGTTATGAAAAAATTATTCACCACTATGGTGTTTCATAACTTGCAGAAAGGTGATGTATTTAAAGCAGTTTTCCGTGTTAATGCTTATAATAAGCTTGAGGCCTACTGCAAAATTGAAGGTGTGCCAACAGATATTCTCGTTAATGGAATTTCCTTGCAGAATAGAGCTTTGGAAGGGGACGTGGTTGCAGTGAAGGTAGATCCTGTAATGTTATGGACCAAAATGAGGGGGTCAATTGAGGTATCTAACAATGAAGCTACGGGAAAAGATAGTGATTTACTCATTGAAGATAATGAAATTGAGGTTCCCAATTGCAAAGGCAAGTGCAAGAGAGATGGTGAATTTGAGTGTAGCTATTTATATTCTCAATCTCCTTCCAAGGAGGTCTCTAATGAGTGCCAGCCTCTAACTTGTGACAATCTGTTAGATGGATGCCACTTCTCAAATGTGCTGAAAAATTTGTGTGATACGATTGGTTCATTTCCTTCGAAAAGACCGACTGGTAGGGTTGTAGCAATCATTGAAAGGTCTCGCCAACGAGATACTGTTGTTGGATATCTCAATGTAACTTACATGGAATATCAGAAAGAGGTGAAGAAGAACAATGCCTCTTTTTCATTCTCTGACCATGATTTCATCCAGCTGACACCAACCAACCCTAGATTTCCAGAAATGATGGTTTTTGTGAGAGATCTACCTGACTGCATCAAGAAGAGGTTAGAGGAAGGTGATGCAACAGTCAAAAGTGAGCTGGTAGGAGTACGAATTGGAGATTGGGCAGAGGAAAGTTCTATTCCACAAGCCCAAATACTGCATATATTTGGGAGAGGAGGAGAAATTGAATCACATATTAATGCTATATTGTTTGAAAATAATATCCGTACATCCGAATTTTCTTCTGATTTACTTCCTTGGCTTCAACATGGTACTTGGGAGGTCCCACTCAATGAATATCACGGAAGAAAAGACCTTAGAAATTTATGCATATTTACTATTGATCTTGCAACTGCGACTGACCTAGATGATGCTCTTTCAGTTGAAGTGTTAGCTAATAACGTTTACAGGATAGGTGTACATATTGCAGATTTGTCATATTTTGTATTACCTGACACTGCATTGGACATGGAAGCTCAAATGCGGTCATCAAGTGTCTATCTGGTGGACCGCAAAGTACCAATGTTGCCTCCATTAGTTTCTGAGAATATGGGTTCACTAAATCCTGGCGAGAATAGATTAGCATTTTCTTTACTTTTTGACCTTGATCATACTGGGGATCTTATAGACCGTTGGATTGGTCGTACAGTGATACAATCTTGTTGCAAGCTTTCGTACGAACATGCTCAATACATTATTGATGGGTTATTTGATGCCGAGAGTTCTGTAATTTCGAAGAATGTCTATCCCCAATTGCATGGTCAATTTCAATGGCATGATGTAGTAACATCTGTCAAGATCCTGAATGATATTTCGAAAGCTTTAAGAAAGAAGAGGATTAGCAATGGCGCTCTACAACTTGAAAGCTCCAGAGTAGTTTTTGTCCTGGATGAGTGTGGAATCCCATATGATAGCATGCTTTGTGAATGGAATGACGCAAACTTTCTTGTTGAGGAGTTTATGCTTCTGGCAAATACAACAGCTGCTGAAGTCATATCTAGGGCTTTTTCTGATAGTGCACTGCTTAGGAGACACCCTGAGCCTAATATTAGGAAGCTGAGAGAGTTTGAAGCGTTTTGTTTGAAACATAGTTTAGAGTTGGATGCTTCTTCTTCTGGCCAGTTCAATCAGTCTTTGGAGCGACTTAAGCAAAAACTCAAGAATGATTCAGTATTGTTTGATATTCTGAACTCCTATGCTTCAAGGCCAATGGAACTAGCGATTTACTTCTGCAGTGGAGAGATTAAAGACAATGTAAAAGATTGGAATCATTACGCTCTTGCTGTTCCACTTTACACTCATTTTACTTCACCACTACGACGATATCCTGATATTATAGTGCATCGACTTCTTGCTGCTGCTGTGGAGGCTGAGAAGATTTTGAAGGATCAAAGTTCCTTTCAGAAAGTAAATAGGAGTATGGAGATAAGTGGAAGGTGTTTTACTGGTCTTCCTTTTGATAAAAATGCTGCAGAATCCATGGAGGTGAGGGAAGCATTATCTGCTGCAGCGCATAGGCAGAGAGTTCCCTGCACCGAACCACTGGCTAATATTGCTGCCTATTGTAATGAAAGAAAACTGGCTAGTCGACGTGTTAAGAATTCCTGTGATAAACTCTACATGTGGGCTATGCTGAAGAAAAATGAGTTTTTAATCACAAATGCAAGAGTTATGGGTCTTGGACCGAGATTTATGTCAGTTTATGTTCACAGGCTCGCTATCGAGCGGCGAATATATTATGATGAAGTTGAAGGCTTGATAGTGGAATGGCTTGACCTTACGTCTTCATTGATTCTTAGTTTATGTGCTAACAAGCGCACAAATAAGAGAGGTAACCCAAGTAAATGGAGGGCACTTGAAGAAGCTGCACTAGTGGTCTCTCCTAGTGACCTTACATATGAACATGGCCTAGTTGAAGGAAGTTTAAGCTGGCCCGTTTCAACTCCAGTAGGAGATAATATTGTCAAATCTAGTATTTTCAAGACTGAAATAGATCCCAAAGTTTTCCCGTTTACAGTTCGACTGCTTTCTACAATTCCAGTCGTACTTCACCCAGTCGGTGGGGATGATGGACCGATCGATATTTCAGTGAGATTATTCATGAGCTCATACTTGAGGTAA 3408 39.96 MIERVDNGDKEKKKKRRSTRRSKQSASSLTSASCGSINEINGAASACLKNVRIVNHGAGPLNDPSLKECTVDTLSPVDDGPTSEINVSFSSLPTMYISEQGDIPEIQISKNQHLSSNDSGSVVSKSCSQLDQGVIMDSQIAKNECVSSNGHGSAQSKSHSSDIGYLGPYTNNCLSPSNQVDGHTRKKYFSPHWSMDAINGAIQVCQKPCLNVMKKLFTTMVFHNLQKGDVFKAVFRVNAYNKLEAYCKIEGVPTDILVNGISLQNRALEGDVVAVKVDPVMLWTKMRGSIEVSNNEATGKDSDLLIEDNEIEVPNCKGKCKRDGEFECSYLYSQSPSKEVSNECQPLTCDNLLDGCHFSNVLKNLCDTIGSFPSKRPTGRVVAIIERSRQRDTVVGYLNVTYMEYQKEVKKNNASFSFSDHDFIQLTPTNPRFPEMMVFVRDLPDCIKKRLEEGDATVKSELVGVRIGDWAEESSIPQAQILHIFGRGGEIESHINAILFENNIRTSEFSSDLLPWLQHGTWEVPLNEYHGRKDLRNLCIFTIDLATATDLDDALSVEVLANNVYRIGVHIADLSYFVLPDTALDMEAQMRSSSVYLVDRKVPMLPPLVSENMGSLNPGENRLAFSLLFDLDHTGDLIDRWIGRTVIQSCCKLSYEHAQYIIDGLFDAESSVISKNVYPQLHGQFQWHDVVTSVKILNDISKALRKKRISNGALQLESSRVVFVLDECGIPYDSMLCEWNDANFLVEEFMLLANTTAAEVISRAFSDSALLRRHPEPNIRKLREFEAFCLKHSLELDASSSGQFNQSLERLKQKLKNDSVLFDILNSYASRPMELAIYFCSGEIKDNVKDWNHYALAVPLYTHFTSPLRRYPDIIVHRLLAAAVEAEKILKDQSSFQKVNRSMEISGRCFTGLPFDKNAAESMEVREALSAAAHRQRVPCTEPLANIAAYCNERKLASRRVKNSCDKLYMWAMLKKNEFLITNARVMGLGPRFMSVYVHRLAIERRIYYDEVEGLIVEWLDLTSSLILSLCANKRTNKRGNPSKWRALEEAALVVSPSDLTYEHGLVEGSLSWPVSTPVGDNIVKSSIFKTEIDPKVFPFTVRLLSTIPVVLHPVGGDDGPIDISVRLFMSSYLR 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7791878 7797197 - Bma001048.1 Bma01g00828 75345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00828 1135 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Bma01g00828 1135 SUPERFAMILY Nucleic acid-binding proteins 221 387 IPR012340 -
Bma01g00828 1135 Pfam Dis3-like cold-shock domain 2 (CSD2) 424 503 IPR041505 -
Bma01g00828 1135 PANTHER DIS3-LIKE EXONUCLEASE 2 109 1133 - -
Bma01g00828 1135 SMART RNB_2 532 886 IPR001900 GO:0003723|GO:0004540
Bma01g00828 1135 Gene3D - 178 306 - -
Bma01g00828 1135 MobiDBLite consensus disorder prediction 1 31 - -
Bma01g00828 1135 Pfam RNB domain 532 884 IPR001900 GO:0003723|GO:0004540
Bma01g00828 1135 Hamap DIS3-like exonuclease 2 [DIS3L2]. 10 1110 IPR028591 GO:0000175|GO:0034427
Bma01g00828 1135 SUPERFAMILY Nucleic acid-binding proteins 378 506 IPR012340 -
Bma01g00828 1135 ProSitePatterns Ribonuclease II family signature. 853 877 IPR022966 -
Bma01g00828 1135 PANTHER RIBONUCLEASE 109 1133 - -
Bma01g00828 1135 Gene3D - 401 490 - -
Bma01g00828 1135 SUPERFAMILY Nucleic acid-binding proteins 492 976 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00828 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - qsu:112003113 1176.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00828 Bma02g00223 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00828 Bma-Chr1:7791878 Bma01g01864 Bma-Chr1:68391380 4.57E-16 dispersed
Bma09g00236 Bma-Chr9:10129870 Bma01g00828 Bma-Chr1:7791878 4.85E-86 transposed
Bma01g00828 Bma-Chr1:7791878 Bma02g00223 Bma-Chr2:2362637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00828 Bma_Chr01 FPKM 8.647022 9.024361 32.334324 34.902802 12.796673 12.426227 11.99264 170.312286 175.158813 162.886887