Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00830 ATGGTGGTGGAGAGAGTTCAGGATATTGCAAAGTCATTGATGAAATTCTCAGTCTCTATACCTGAAGAGTTCGTCAGATTAGAGTCTGAGCAGCCCGGAATCACCACCGTCCACGGCAAAGAACTGGGCGTTCCGACCATCGACTTCAGCAACCCAGATGAGGAACGTGTGGTGTGCGACATTGCTGAAGCTTCCAAGAACTGGGGGATGTTTCAGATCGTCAACCATGGAATTCCTAATGAAGTTATTAAGAAATTGCAGGAAGTTGGAGAGGAGTTCTTCCGTCTTCCTCGCGAGGAGAAGGAGGTTTATGCTAAGCCTCCTGATTCCAAATCAGTCGAAGGGTATGGAACTAAGCTTCAGAAAGAAGCAGACTCGAAGAAAGGATGGGTTGATCATTTGTTTCATAAAATATGGCCTCCTTCGGCCATTAATTATCAGTTTTGGCCTAAGAAACCTTCCTCTTACAGAGAAGCGAACGAGGAGTACGCAAAGTACATGCGAGAAGTAGTGAAACAGCTGTTCAGGAGTTTATCATTAGGGTTAGGACTGGAAGCAGGTGAGATGGAGGAAGCATTTGGCGGAGTAATGATGGAATATCTTCTGAAAATAAACTACTATCCACCATGTCCACGCCCTGATCTAGCTCTCGGAGTGGTGGCTCACACAGACATGTCGACCTTAACCATCCTCGTCCCTAACCATGTGCAGGGTCTCCAAGCTTTCAGCGATGGCCGCTGGTTTAGCGTCAAATATATTCCTAACGCCCTCGTCGTCCATATAGGCGATCAAATCGAGATCTTGAGCAACGGCATTTACAAGAGCGTACTTCACCGGACCACGGTGAACAAAGTGGAGACAAGGATGTCGTGGCCCGTCTTCGTCGAACCTCCGGGCGACTTGGAAATTGGCCCCCACCCTAAATTAGTTGGCCATGACAATCCTCCCAAGTACAAAACTATGAAATACGGTGACTATGTCTACTGCAAACTCAACAAGCTTCCTCGATGA 1011 47.38 MVVERVQDIAKSLMKFSVSIPEEFVRLESEQPGITTVHGKELGVPTIDFSNPDEERVVCDIAEASKNWGMFQIVNHGIPNEVIKKLQEVGEEFFRLPREEKEVYAKPPDSKSVEGYGTKLQKEADSKKGWVDHLFHKIWPPSAINYQFWPKKPSSYREANEEYAKYMREVVKQLFRSLSLGLGLEAGEMEEAFGGVMMEYLLKINYYPPCPRPDLALGVVAHTDMSTLTILVPNHVQGLQAFSDGRWFSVKYIPNALVVHIGDQIEILSNGIYKSVLHRTTVNKVETRMSWPVFVEPPGDLEIGPHPKLVGHDNPPKYKTMKYGDYVYCKLNKLPR 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7815478 7818166 + Bma001050.1 Bma01g00830 75347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00830 336 Gene3D - 1 334 IPR027443 -
Bma01g00830 336 Pfam non-haem dioxygenase in morphine synthesis N-terminal 44 151 IPR026992 -
Bma01g00830 336 PANTHER OS02G0767300 PROTEIN 16 333 - -
Bma01g00830 336 Pfam 2OG-Fe(II) oxygenase superfamily 201 297 IPR044861 -
Bma01g00830 336 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 297 IPR005123 -
Bma01g00830 336 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 16 333 - -
Bma01g00830 336 SUPERFAMILY Clavaminate synthase-like 19 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00830 K05278 FLS; flavonol synthase [EC:1.14.20.6] - qsu:112004171 504.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00830 Bma-Chr1:7815478 Bma05g00800 Bma-Chr5:45251185 5.79E-90 dispersed
Bma12g00354 Bma-Chr12:5922301 Bma01g00830 Bma-Chr1:7815478 5.91E-65 transposed
Bma12g00371 Bma-Chr12:6970411 Bma01g00830 Bma-Chr1:7815478 2.15E-64 transposed
Bma01g00830 Bma-Chr1:7815478 Bma01g02641 Bma-Chr1:83915758 0 wgd
Bma01g00830 Bma-Chr1:7815478 Bma05g01385 Bma-Chr5:53271594 3.35E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g305 . . . . . Bpe04g00480 . . Cmo04g02456 . . . . . . . . . . . . . . . Cla08g00561 Cam08g0978 Cec08g0568 Cco08g0677 Clacu08g0685 . Cre08g0500 . . . . . . . . . Blo18g00190 . Bda01g01416 . . Bma01g00830 . . . . . . Car04g02274 . Cpe01g02036 . . . . . . . . . . . . . . . Lsi08g00410 . Chy03g00353 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00830 Bma_Chr01 FPKM 13.998684 11.994702 16.969597 17.819113 13.256869 12.6535 13.168328 30.284761 31.058517 30.445486