Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00833 ATGTTGCGTAAGGAGAAGGAAGAAGAAGAATGGGTCAAGAAATGTAAGAAAATGAAATGGTTTTCTGGTTCGCTCTGTAATAACACGAAGGTAATGCAAAGGCCTGAAACTGGGTCGCCGGAGGTTTACAAGAAAAGGGCTTTAATGGCTTCCTCAAACAGCTACATTACCGATTCTTCTACCTCTACCAGGTCCATGAAGTCTACTGTTTACGAACAAAACGGCGTCATTTCAACGTCGTTTTCTTCGTCTTCTTCTTCTTCTGCAACTTCCATCGCCGCCTTCGGTGGGTCTTTCAGAGGAATACCTTTCGGAAAAATTTCTGGGTGTTACGAGTGTAAAATGGTGATCGACCCTGTTCTTGGATATACCAAAGATTCTTCTTTGAGATCAAGCATTTTTCCTTGTCCTCAATGTTGTGAGATTTTCACGAAACCTGAAATTCTGGAGCTTCATCTGGCCAATAACCATGCTGTATCTGAATTAGACGAAGAGGATACAAGCAAAAACATAGTGGAAATCATATTCAAATCAAGATGGATGAAGAAGGAACCTCAAATCTGCAAGATAGAACGAGTTCTAAAAGTCCACAACACCCAAAAAACCATTTCGAAATTCGAAGAGTACAGAGACGCCATTAAAGCCAAAGCAACCAAGCTCCAGAAGAAACACCCCCGATGCCTAGCGGACGGAAACGAGCTTCTCCGGTTCCACTGCACCACCTTAGCTTGCTCCCTAGGCGTCAATGGCTGCTTCACTCTATGCCACTCGATCCATCCTCAGTGCAGTATCTGCAGCATCATAAGGAGCGGCTTCAGGGCAGCCGAGATGGGAATTTTGACGATGGCAGCAAGTGGAGCAGCTCACGACAGGGCCGGGGAGGCGGTGGAAAGGAATGAGAAGAGGGCGATGGTGGTTTGCAGGGTGGTGGCCGGGAGGGTGAAGAAGAGCGGGGAAGGGAGCATGGAGGAGTATGACTCAGTGAGCGGAGGTGTGGGAGTTCATTCTAATTTGGACGAGTTGTATGTGTTTAATGCCAAGGCTATACTGCCTTGTTTTGTTGTTATCTATCAAGGGTAA 1080 46.3 MLRKEKEEEEWVKKCKKMKWFSGSLCNNTKVMQRPETGSPEVYKKRALMASSNSYITDSSTSTRSMKSTVYEQNGVISTSFSSSSSSSATSIAAFGGSFRGIPFGKISGCYECKMVIDPVLGYTKDSSLRSSIFPCPQCCEIFTKPEILELHLANNHAVSELDEEDTSKNIVEIIFKSRWMKKEPQICKIERVLKVHNTQKTISKFEEYRDAIKAKATKLQKKHPRCLADGNELLRFHCTTLACSLGVNGCFTLCHSIHPQCSICSIIRSGFRAAEMGILTMAASGAAHDRAGEAVERNEKRAMVVCRVVAGRVKKSGEGSMEEYDSVSGGVGVHSNLDELYVFNAKAILPCFVVIYQG 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7839060 7840250 - Bma001053.1 Bma01g00833 75350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00833 359 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 14 358 - -
Bma01g00833 359 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 14 358 - -
Bma01g00833 359 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Bma01g00833 359 Gene3D - 157 358 - -
Bma01g00833 359 SUPERFAMILY ADP-ribosylation 159 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00833 - - - qlo:115960248 468.388
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02640 Bma01g00833 CCT
Bma01g00833 Bma02g00231 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00833 Bma-Chr1:7839060 Bma02g00231 Bma-Chr2:2421948 1.32E-175 dispersed
Bma14g00038 Bma-Chr14:500946 Bma01g00833 Bma-Chr1:7839060 2.34E-34 dispersed
Bma01g00833 Bma-Chr1:7839060 Bma01g00835 Bma-Chr1:7883422 0 proximal
Bma01g00833 Bma-Chr1:7839060 Bma01g02640 Bma-Chr1:83911540 1.26E-141 wgd
Bma01g00833 Bma-Chr1:7839060 Bma02g00228 Bma-Chr2:2396807 2.77E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g315 . Blo12g00683 . Bda03g00523 Bpe02g00078 Bpe04g00477 . Bma01g02640 Cmo04g02449 Cmo15g00715 . . . . . . . . . . . . . . . . . . . . . Cone4ag1379 Cone7ag1552 Cone17ag1266 . . . . . Blo17g00187 . . Bda01g01412 Bpe02g01625 . Bma01g00833 Bma02g00231 . . . . . Car04g02261 Car15g00647 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003484 2 1 3 5 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00833 Bma_Chr01 FPKM 7.408679 8.887733 12.741434 11.132585 11.140177 11.975001 12.441351 15.803256 14.671735 15.237913