Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00837 ATGTATTATGTGAATGGAGACTGTTCCAAGAAGGGAAAAGGATTTGATTCTTCAACCCAGACCCATCTACTATGGCAACGGAGCAAGCCACCAAAATTCCCTACTCGATATAACCTGACGCGATTTGCCATGACCTTAAATGAGTTGACATCCGGATTAAAGGAAAAGTTACCACCTACAGATTCAAGACTAAGACCGGACCAAAGGTATTTGGAAAATGGAGAATTTGAAATGGCCAATTCGGAGAAGTTGCGGCTGGAACAGCGGCAACGACAGGCTAGGAAAATGCAAGAGAGAGGATGGAAACCAAGATGGTTTGCAAAGGATAAAGGAAGTGAAACTTATCGATACATAGGTGGGTATTGGGAGGCTAGAGAAGAACGAAACTGGGATTCATGTCCTGACATTTTTGACCAAACCTCCTCTGATCAGCTTCTTGAGTAA 444 43.24 MYYVNGDCSKKGKGFDSSTQTHLLWQRSKPPKFPTRYNLTRFAMTLNELTSGLKEKLPPTDSRLRPDQRYLENGEFEMANSEKLRLEQRQRQARKMQERGWKPRWFAKDKGSETYRYIGGYWEAREERNWDSCPDIFDQTSSDQLLE 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7920131 7921203 - Bma001058.1 Bma01g00837 75354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00837 147 Pfam Oxysterol-binding protein 17 126 IPR000648 GO:0008289
Bma01g00837 147 Coils Coil 79 99 - -
Bma01g00837 147 SUPERFAMILY Oxysterol-binding protein-like 13 139 IPR037239 -
Bma01g00837 147 Gene3D - 68 144 - -
Bma01g00837 147 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 141 IPR000648 GO:0008289
Bma01g00837 147 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 1 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00837 K20456 OSBP; oxysterol-binding protein 1 - tcc:18592269 269.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00837 Bma02g00235 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00837 Bma-Chr1:7920131 Bma12g00163 Bma-Chr12:2260295 9.08E-61 dispersed
Bma01g00837 Bma-Chr1:7920131 Bma02g00235 Bma-Chr2:2467226 2.43E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g320 . . . . . . . . Cmo04g02445 Cmo15g00720 . . . . . . . . . . . . . . . . . . . . . Cone4ag1377 Cone7ag1554 Cone17ag1264 Cone20ag0464 . . . . Blo17g00190 Blo18g00195 . Bda13g01496 Bpe02g01623 Bpe14g00370 Bma01g00837 Bma02g00235 . . . . . Car04g02258 Car15g00652 Cpe01g02027 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021470 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00837 Bma_Chr01 FPKM 14.712584 14.542565 16.264135 14.673195 12.992559 14.897324 13.442565 20.334219 18.981464 19.093422