Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00839 ATGGCGGCTTCCGTTTCGCGGCAGTTACCGGCTTTGAACGGCGGCGTTGTTCATACTTTCAAATCTGGTCCGAACCACCGGTCGGACTCGCCGGTGCGGGGATGTAATTTTCCGCCGAGTTCTGAGTTTTCTGTCCCGAAGAGAGCTAATGGGTTCCAAGAGGATGATTATTCCAGTGATGAAGAGGGTGAGAGTGAATATCGCGATTTGATTCGGAAGGGAAACAGGGAATTGGAGCCGTCGGTCTTGGACGGAAGAGATGAGGGAACGGCTGATAATTGGATCGAGCGAAACTCTACTATGGTCCGTCTCACTGGAAAGCACCCCTTCAACGCCGAGGCTCCTTTAACCCGATTAATGAACCACGGCTTTATCACTCCGGTGCCTCTCCACTACGTCAGAAACCACGGCGCCGTTCCAAAGGGCGACTGGGCTACGTGGACCGTCGAAGTCACCGGCCTCGTCAAACGGCCGGCCAAGTTCACGATGGATCAGCTGGTCAACGAGTTCCCTTTCAGAGAATTCCCGGTGACCCTCGTCTGCGCTGGGAACCGGCGCAAGGAGCAGAACATGGTCAAGAAAACCATCGGTTTTAACTGGGGCGCCGCAGGGGTCTCAACCTCCGTGTGGCGCGGGGTTCCGTTAAGATACGTCCTCAAACGATGCGGCATCTTCGGCCGAAACAATGGCGGCCTTAACGTCTGCTTCGAAGGCGCCGAGGACTTGCCCGGAGGTGGTGGGTCAAAGTACGGTACAAGCATTAAGAAAGAATTCGCCATGGATCCCGCTAGAGACATCATTTTAGCTTACATGCAGAACGGGGAGAGATTAGCGCCGGACCACGGCTTCCCGGTGAGAATGATAATCCCGGGATTCATCGGCGGCCGCATGGTAAAATGGCTCAAACGAATCATCGTCACAACCCAAGAATCAGACAACCATTATCACTTCAAGGATAACCGAGTTCTTCCCTCCCACGTCGACGCCGAGCTAGCGAACGCCGAAGCTTGGTGGTATAAGCCGGAGTATATAATCAACGAGCTGAACATAAACTCGGTCATAACGACGCCCTGTCATGAAGAAATCTTGCCCATAAATTCATGGACAACTCAGCGGCCCTACACCTTGAGGGGCTATGCGTATTCCGGAGGGGGGAAGAAAGTGACCCGAGTGGAGGTGACGATGGACGGCGGAGAGAACTGGTACGTCTGCACGTTGGAGCATCCGGAGAAGGGGAACAAGTACGGGAAATTCTGGTGCTGGTGTTTCTGGTCGCTGGAGGTGGAAGTGCTAGAGGTTCTGGCGACCAAGGAGATCGCCGTCCGAGCCTGGGACGAATCTCTCAACACTCAGCCGGAAAAACTCAACTGGAACGTCATGGGAATGATGAACAACTGTTGGTTCAAAGTGAAGACAAATGTGTGCAGGCCCCACAAGGGAGAGATCGGAATTGCATTCGAGCATCCAACTCTGCCGGGCAACCAGTCCGGCGGATGGATGGCCAAAGAGAAACACCTTGAAATCACATCGGAAAGCAACCCGACCTTGAAGAAGAGCCTTTCTTCTCCTTTTATGAACACTAACTCCAAGACATATTCCATGTCGGAGGTAAGCAAACACAACGACGAGAAATCGGCTTGGATCGTCGTCCACGGCCATGTCTACGACTGCACCCGCTTTCTGAAAGACCACCCCGGAGGTACTGATAGTATTCTCCTCAACGCCGGAACCGACTGTACTGAGGAATTCGACGCTATTCATTCTGACAAAGCCAAGAAGATGCTCGAAGAGTACAGAGTCGGCGAGTTAATCTCCACTGGTTACATGTCCGACTCCACGTCTTCTTCACCAAACACTTCAGTTCACGGTGCTTCCAACATGTCCTTTCACTTAGCTCCGATCAAAGAAATAGCTCCGGCCAAACGCGTCGCCCTAGTTCCCCAAGAAAAAATCCCATGCAAGCTCATCGCCAAAACTTCGATCTCTCACGACGTTAGAATTTTCCGCTTCGCTTTACCGTCTGACGATATGCTTCTCGGATTACCCGTCGGCAAACACATTTTTGTCTGCGCCAACATCGAAGGGAAGCTCTGCATGAGAGCTTATACTCCGTCGAGCACCATTGACGAAGTCGGTTTCTTCGAACTTGTAGTGAAAGTCTACTTCAAGAATGTCCATCCAAAGTTCCCGAACGGAGGGCTCATGTCCCAATATCTTGACTCTCTGCAACTAGGCGACGGAATCCAAATAAAGGGTCCATTAGGCCACATAGAATACACCGGCCGAGGTAACTTCCTCGTCCATAAAAAGCCGAAGTTTGCCAAAAAACTAGCCATGATAGCCGGTGGAACGGGAATAACGCCAATTTATCAAGTCGTTCAAGCCATTCTGAAGGATCCTGAAGATGAGACAGAAATGTTCATCGTCTACGCTAACAGAACGGAAGATGATATTCTGTTAAGAGAAGAGCTCGATTCGTGGGCAGAGCAGCACGAGAGATTAAAGGTCTGGTATGTAGTTCAAGAAAGCATAAAAGAAGGATGGAGTTACAGCCTTGGCTTCATCACCGAGACCATCTTGCGCGAGCATATTCCCGACGGATCCGACAGCGTCCTCGCTCTGGTTTGCGGTCCGCCGCCGATGATTCAATTTGCCGTGCAGCCAAACCTGGAGAAGATGAACTACGATATCCAGAATTCAATGCTCGTGTTTTAG 2715 51.45 MAASVSRQLPALNGGVVHTFKSGPNHRSDSPVRGCNFPPSSEFSVPKRANGFQEDDYSSDEEGESEYRDLIRKGNRELEPSVLDGRDEGTADNWIERNSTMVRLTGKHPFNAEAPLTRLMNHGFITPVPLHYVRNHGAVPKGDWATWTVEVTGLVKRPAKFTMDQLVNEFPFREFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGVSTSVWRGVPLRYVLKRCGIFGRNNGGLNVCFEGAEDLPGGGGSKYGTSIKKEFAMDPARDIILAYMQNGERLAPDHGFPVRMIIPGFIGGRMVKWLKRIIVTTQESDNHYHFKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTMDGGENWYVCTLEHPEKGNKYGKFWCWCFWSLEVEVLEVLATKEIAVRAWDESLNTQPEKLNWNVMGMMNNCWFKVKTNVCRPHKGEIGIAFEHPTLPGNQSGGWMAKEKHLEITSESNPTLKKSLSSPFMNTNSKTYSMSEVSKHNDEKSAWIVVHGHVYDCTRFLKDHPGGTDSILLNAGTDCTEEFDAIHSDKAKKMLEEYRVGELISTGYMSDSTSSSPNTSVHGASNMSFHLAPIKEIAPAKRVALVPQEKIPCKLIAKTSISHDVRIFRFALPSDDMLLGLPVGKHIFVCANIEGKLCMRAYTPSSTIDEVGFFELVVKVYFKNVHPKFPNGGLMSQYLDSLQLGDGIQIKGPLGHIEYTGRGNFLVHKKPKFAKKLAMIAGGTGITPIYQVVQAILKDPEDETEMFIVYANRTEDDILLREELDSWAEQHERLKVWYVVQESIKEGWSYSLGFITETILREHIPDGSDSVLALVCGPPPMIQFAVQPNLEKMNYDIQNSMLVF 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7935673 7939183 - Bma001060.1 Bma01g00839 75356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00839 904 Pfam Cytochrome b5-like Heme/Steroid binding domain 534 603 IPR001199 -
Bma01g00839 904 PRINTS Cytochrome B5 signature 591 603 IPR001199 -
Bma01g00839 904 PRINTS Cytochrome B5 signature 554 564 IPR001199 -
Bma01g00839 904 PRINTS Cytochrome B5 signature 564 578 IPR001199 -
Bma01g00839 904 PRINTS Cytochrome B5 signature 579 586 IPR001199 -
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 816 827 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 804 813 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 732 741 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 563 573 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 778 797 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 872 880 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 700 707 IPR001709 GO:0016491
Bma01g00839 904 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 848 864 IPR001709 GO:0016491
Bma01g00839 904 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 648 760 IPR017927 GO:0016491
Bma01g00839 904 CDD eukary_NR_Moco 87 472 - -
Bma01g00839 904 SMART Cyt_b5_2 532 604 IPR001199 -
Bma01g00839 904 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 529 604 IPR001199 -
Bma01g00839 904 Pfam Oxidoreductase FAD-binding domain 653 759 IPR008333 -
Bma01g00839 904 PANTHER NITRATE REDUCTASE 62 904 - -
Bma01g00839 904 SUPERFAMILY Riboflavin synthase domain-like 643 760 IPR017938 -
Bma01g00839 904 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 528 607 IPR036400 -
Bma01g00839 904 PIRSF Nitr_rd_NADH 24 903 IPR012137 GO:0006809|GO:0042128|GO:0050464
Bma01g00839 904 PRINTS Cytochrome B5 reductase signature 700 707 - -
Bma01g00839 904 PRINTS Cytochrome B5 reductase signature 745 759 - -
Bma01g00839 904 PRINTS Cytochrome B5 reductase signature 679 690 - -
Bma01g00839 904 PRINTS Cytochrome B5 reductase signature 872 880 - -
Bma01g00839 904 PRINTS Cytochrome B5 reductase signature 816 827 - -
Bma01g00839 904 PRINTS Cytochrome B5 reductase signature 778 797 - -
Bma01g00839 904 Pfam Oxidoreductase NAD-binding domain 779 886 IPR001433 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 455 468 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 177 188 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 261 277 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 417 427 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 376 390 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 294 307 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 442 454 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 203 218 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 124 140 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 102 116 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 188 200 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 390 402 IPR008335 GO:0016491
Bma01g00839 904 PRINTS Eukaryotic molybdopterin domain signature 345 357 IPR008335 GO:0016491
Bma01g00839 904 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 153 188 IPR022407 GO:0043546
Bma01g00839 904 Pfam Oxidoreductase molybdopterin binding domain 136 315 IPR000572 -
Bma01g00839 904 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 560 567 IPR018506 GO:0020037
Bma01g00839 904 Gene3D - 86 337 IPR036374 -
Bma01g00839 904 Gene3D - 755 904 IPR039261 -
Bma01g00839 904 MobiDBLite consensus disorder prediction 1 73 - -
Bma01g00839 904 PANTHER NADH-CYTOCHROME B5 REDUCTASE 62 904 IPR001834 GO:0016491
Bma01g00839 904 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 84 345 IPR036374 -
Bma01g00839 904 Gene3D Translation factors 640 754 - -
Bma01g00839 904 CDD cyt_b5_reduct_like 653 896 - -
Bma01g00839 904 Pfam Mo-co oxidoreductase dimerisation domain 343 474 IPR005066 GO:0016491|GO:0030151
Bma01g00839 904 Gene3D - 525 606 IPR036400 -
Bma01g00839 904 SUPERFAMILY E set domains 347 474 IPR014756 -
Bma01g00839 904 Gene3D - 347 522 - -
Bma01g00839 904 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 746 899 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00839 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - vvi:100264320 1565.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00839 Bma02g00239 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00839 Bma-Chr1:7935673 Bma13g00579 Bma-Chr13:12383191 2.19E-57 dispersed
Bma14g02023 Bma-Chr14:43583012 Bma01g00839 Bma-Chr1:7935673 4.41E-19 dispersed
Bma01g00839 Bma-Chr1:7935673 Bma01g00842 Bma-Chr1:7974164 2.48E-64 proximal
Bma11g00894 Bma-Chr11:33971462 Bma01g00839 Bma-Chr1:7935673 2.52E-56 transposed
Bma01g00839 Bma-Chr1:7935673 Bma02g00239 Bma-Chr2:2504027 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00839 Bma_Chr01 FPKM 0.434343 0.277617 0.116411 0.220304 9.244181 7.14683 9.990604 0.045081 0.038205 0.0