Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00841 | ATGGGTCGTCGGAGGAGGAGTTTGTCGGAGCTCGGTTGCTCGCTGCTCGCTGCTTCAGAAATCCAAAATGATGATTCTTCAAGCACAACCACGGAGCCTTATATATCTCCAAATGGGAGACTGAAGCCGATTATTTCGAACTGGCAAAAGGGTGAGCTTCTGGGGCGAGGATCATTTGGATCGGTGTACGAAGGAATTTCTTGTGATGGGTTTTTTTTCGCTGTCAAGGAAGTTTCACTGCTTGATCAAAACAATCAGGAACAACAAAGTATTATACAGCTTCAGCAGGAGATTGCTCTTTTAAGTCACTTTGAGCACGAGAATATAGTGCAATATTACGGCACCGAGAAGACTGAATCACACCTATTCATTTTTCTTGAGCTTGTGACAAAAGGATCCCTTATGAAGCTTTATCAGACGTATCATCTTATAGATTCTCAAGTTTCTGCATATACAAGACAAATTTTGCATGGTTTGAAATATCTTCACGAACAAAACGTGGTTCACAGGGATATTAAATGTGCAAATATATTAGTGGATGCCAGTGGAGCAGTAAAGCTTGCCGATTTTGGGTTGGCAAAGGCAACAAAAATGAATGATATTAAATCCTGTAAGGGAACATTATTCTGGATGGCACCTGAGGTCGTTAATAGGAAGAACCAAGGATATGGTCACCCAGCTGATATTTGGAGCCTTGGTTGCACTGTATTGGAGATGTTAACAGGAAAACTTCCATACTCTGAGTTGGACAATCCAATGTCGGCATTGTTTGAAATTGGAAGTGGTAAGCTACCAGTTGTTCCAGATTCTCTATCAACGGATGCACGTGATTTTGTACTGCAGTGCTTACAGCCTAACCCACATGGCCGTCCATCTGCTGCTCAACTCTTAGAGCATCCATTTGTGAAGAGATCTATCCCTACGATATAA | 930 | 42.04 | MGRRRRSLSELGCSLLAASEIQNDDSSSTTTEPYISPNGRLKPIISNWQKGELLGRGSFGSVYEGISCDGFFFAVKEVSLLDQNNQEQQSIIQLQQEIALLSHFEHENIVQYYGTEKTESHLFIFLELVTKGSLMKLYQTYHLIDSQVSAYTRQILHGLKYLHEQNVVHRDIKCANILVDASGAVKLADFGLAKATKMNDIKSCKGTLFWMAPEVVNRKNQGYGHPADIWSLGCTVLEMLTGKLPYSELDNPMSALFEIGSGKLPVVPDSLSTDARDFVLQCLQPNPHGRPSAAQLLEHPFVKRSIPTI | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7951419 | 7960174 | - | Bma001062.1 | Bma01g00841 | 75358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00841 | 309 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 167 | 179 | IPR008271 | GO:0004672|GO:0006468 | |
Bma01g00841 | 309 | PANTHER | MAP KINASE KINASE KINASE-LIKE PROTEIN | 15 | 306 | - | - | |
Bma01g00841 | 309 | SUPERFAMILY | Protein kinase-like (PK-like) | 24 | 305 | IPR011009 | - | |
Bma01g00841 | 309 | ProSitePatterns | Protein kinases ATP-binding region signature. | 54 | 76 | IPR017441 | GO:0005524 | |
Bma01g00841 | 309 | ProSiteProfiles | Protein kinase domain profile. | 48 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00841 | 309 | Pfam | Protein kinase domain | 49 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00841 | 309 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 15 | 306 | - | - | |
Bma01g00841 | 309 | Gene3D | Transferase(Phosphotransferase) domain 1 | 45 | 308 | - | - | |
Bma01g00841 | 309 | SMART | serkin_6 | 48 | 302 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00841 | 309 | PIRSF | ILK | 13 | 299 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02638 | Bma01g00841 | CCT | |
Bma01g00841 | Bma02g00241 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00841 | Bma-Chr1:7951419 | Bma15g00785 | Bma-Chr15:16763102 | 6.79E-80 | dispersed | |
Bma01g00841 | Bma-Chr1:7951419 | Bma01g00844 | Bma-Chr1:7981915 | 0 | proximal | |
Bma03g00420 | Bma-Chr3:3196793 | Bma01g00841 | Bma-Chr1:7951419 | 5.03E-14 | transposed | |
Bma04g01702 | Bma-Chr4:53259009 | Bma01g00841 | Bma-Chr1:7951419 | 7.08E-128 | transposed | |
Bma13g00112 | Bma-Chr13:1170563 | Bma01g00841 | Bma-Chr1:7951419 | 9.80E-59 | transposed | |
Bma14g01892 | Bma-Chr14:40447577 | Bma01g00841 | Bma-Chr1:7951419 | 1.35E-34 | transposed | |
Bma14g01928 | Bma-Chr14:41144676 | Bma01g00841 | Bma-Chr1:7951419 | 1.35E-34 | transposed | |
Bma14g02057 | Bma-Chr14:43912303 | Bma01g00841 | Bma-Chr1:7951419 | 4.35E-73 | transposed | |
Bma01g00841 | Bma-Chr1:7951419 | Bma01g02638 | Bma-Chr1:83891178 | 2.67E-146 | wgd | |
Bma01g00841 | Bma-Chr1:7951419 | Bma02g00241 | Bma-Chr2:2518061 | 2.08E-172 | wgd | |
Bma01g00841 | Bma-Chr1:7951419 | Bma05g01388 | Bma-Chr5:53297476 | 1.76E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66263 | PF00069 | Pkinase | 1.30E-69 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00841 | K13414 | - | pop:7460930 | 447.203 |