Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00856 ATGCATGGCCAGGTTCAGAGACGTTTGACCCAAAACCGTGAAGCTGCTCGTAAAAGTCGTCAAAGGAAAAAGGCATATGTCCAACATTTAGAAACTAGCCGTTTGAAGCTAGCACAGTTGGAGCAAGAAATAGTGAGAGTCCAACAGCAGGGTTTATACACAAGCAATGTAATGAACTCAGGATTTTGTGGAACAGTAAACCCAGTGATTGCTGCATTTGAAATGGAATATACAATGTGGGTTGGAGAGCAACAGAGACAGGACAGTGGACTTCGAAATGCATTGCAAGCTCAAGCAACTGATCTACAGCTTCAGACACTTGTAGACAGTGCCTTGAATCACTACAACAATCTTTTTCGCATGAAATCAGATGCTGCAAAAGGTGATGTTTTCTACTTGTTGTCTGGCTTGTGGAGAACACCAGCTGAACGATTTTTCCTATGGCTTGGAGGATTCCGCCCATCTCAGCTTCTAAATGTTCTCATGCCACATTTTGGACCCTTAACGGATGAACAAGTATTGCATATTAGTAATTTGAGACAATCATCTCAAGAAGCTGAGTATGCTATCTCACAGGGAATGGATCAACTGCATCAAGCTATATTGCAAAGCGTCTCAACAGATGCCCTAAGTTCAGGAAGTTTTGCTTTCCAGATGGATGATCCAATGGAGAAGTTTGAAACACTGGAGAATTTCGTCAGCCAGTGCACTCTCTGTACACAGGCAGACCATCTTCGGCAACAGACCCTCCAGCGGGTGTCTCGCATCCTAATGACAGAGCAAGCAGCTCGAGGCCTGCTTGCCTTAGGAGAGTACTTTCACCGCCTCCGTGCTCTTAGTTCTCTTTGGACTGCCCGCCCTCGTGAACCCACTATGTAG 879 45.28 MHGQVQRRLTQNREAARKSRQRKKAYVQHLETSRLKLAQLEQEIVRVQQQGLYTSNVMNSGFCGTVNPVIAAFEMEYTMWVGEQQRQDSGLRNALQAQATDLQLQTLVDSALNHYNNLFRMKSDAAKGDVFYLLSGLWRTPAERFFLWLGGFRPSQLLNVLMPHFGPLTDEQVLHISNLRQSSQEAEYAISQGMDQLHQAILQSVSTDALSSGSFAFQMDDPMEKFETLENFVSQCTLCTQADHLRQQTLQRVSRILMTEQAARGLLALGEYFHRLRALSSLWTARPREPTM 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8069629 8071692 + Bma001077.1 Bma01g00856 75373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00856 292 Pfam Seed dormancy control 90 162 IPR025422 GO:0006351|GO:0043565
Bma01g00856 292 PANTHER TRANSCRIPTION FACTOR TGA9 3 290 - -
Bma01g00856 292 PANTHER TRANSCRIPTION FACTOR TGA7 3 290 - -
Bma01g00856 292 ProSiteProfiles DOG1 domain profile. 70 286 IPR025422 GO:0006351|GO:0043565
Bma01g00856 292 SUPERFAMILY Leucine zipper domain 5 43 IPR046347 GO:0003700|GO:0006355
Bma01g00856 292 Pfam bZIP transcription factor 4 33 IPR004827 GO:0003700|GO:0006355
Bma01g00856 292 Gene3D - 4 56 - -
Bma01g00856 292 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 7 22 IPR004827 GO:0003700|GO:0006355
Bma01g00856 292 MobiDBLite consensus disorder prediction 1 23 - -
Bma01g00856 292 Coils Coil 23 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00856 Bma-Chr1:8069629 Bma03g00419 Bma-Chr3:3186899 3.14E-95 dispersed
Bma01g02629 Bma-Chr1:83858647 Bma01g00856 Bma-Chr1:8069629 6.25E-19 dispersed
Bma01g00856 Bma-Chr1:8069629 Bma02g00255 Bma-Chr2:2711700 3.00E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56683 PF14144 DOG1 2.50E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00856 K14431 - vvi:100255706 375.555