Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00861 ATGGCGTTGCAGAATATCGGGGCTTCTAACCGTGATGATGCGTTTTATAGATATAAGATGCCTAAAATGATTACCAAAATTGAAGGCAGAGGTAATGGCATCAAGACTAATGTGGTTAACATGGTTGAGATAGCGAAGGCATTGGCTAGGCCTGCTTCTTACACTACTAAGTTTTTTGGCTGTGAGCTTGGAGCACAGTCCAAGTTTGATGAAAAGACTGGCACTTCTTTGGTGAATGGCGCTCATGACACTGCAAAGCTTGCCAGTCTCCTTGAGAACTTCATCAAGAAATACGTTCAATGCTATGGTTGTGGGAACCCTGAAACTGAAATTATCATCACAAAGACACAGATGATCCAACTGAAATGTGCTGCATGTGGGTTTGTTTCAGATGTTGACATGAGGTGCAAGCTTACGACATTTATTCTCAAGAATCCCCCTGAGTCTAAGAAGTCATCAAAAGACAAGAAAGCTATGAGGAGGGCTGAGAAGGAGCGACTTAAGGAGGGCGAGGCTGTTGATGAGGAGCAGAAGAAGCTGAAGAAAGAGGCAGTGAAGAAGAAAAGCACCTCTGGTAGCACAAAGGAAGTTGGGGTTTCCAGAACATCAAGTAAGAAGAGAAGTAATGGTTCTGATGAGGAACATTCTCCAGCTCACAGTCATTCTGATGATAATGGTCAAGCAGATGGTCATGATGACGATGACAATGACAATGATGTTCAGTGGCAGACAGACACATCATTGGAGGCTGCTAGGCAGCGTATCCAGGAGCAGTTGAGTGCTGTTACCGCTGATATGGTGATGCTTACCTCTGAGGAAGAAAGGCAGAAGTCAAAGAAACCTCCAGAACAGGAAAAGGTATCTCAGTCTAATGGGCAGCTGAATGGAAATGGTGTCTCTACCAATGGAAAGCTTGTTAATGAAATAAAAGCATACCTAAAAAAAGGTTCTCCAGCAGCCCAGCTCAAAGCGTTTTTGAATTCTTTGGCTGGTACTCCACAAGAAGTCATGGATGCTCTTTTCGAAGCACTATTTGAAGGTGCCGGAAAGGGTTTCTCTAAAGATGTGGTAAAAAAGAAGAGTTACCTTGCTGCAGCTGTACAAGAGGAGGGATCTCAGACAGTTCTGTTGGGTGCCATCGAGACCTTCTGTCTGAAGTCAAACCCTGAAGCTGCGCGAGAGGTGGCGCTGGTTTTGAAAGCCCTCTATGACAGTGATTTTTTAGAGGAAGAGTTTATAGTTGCGTGGTACCAGCAGGGTCTGAAAAGCAGCAATAAGAGTTCTCCGATGTGGAAGAATGTGAAACCCTTCATCGAGTGGGTGCAGAGTGCCGAGTCTGAAGACGAGTGA 1350 44.81 MALQNIGASNRDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVEIAKALARPASYTTKFFGCELGAQSKFDEKTGTSLVNGAHDTAKLASLLENFIKKYVQCYGCGNPETEIIITKTQMIQLKCAACGFVSDVDMRCKLTTFILKNPPESKKSSKDKKAMRRAEKERLKEGEAVDEEQKKLKKEAVKKKSTSGSTKEVGVSRTSSKKRSNGSDEEHSPAHSHSDDNGQADGHDDDDNDNDVQWQTDTSLEAARQRIQEQLSAVTADMVMLTSEEERQKSKKPPEQEKVSQSNGQLNGNGVSTNGKLVNEIKAYLKKGSPAAQLKAFLNSLAGTPQEVMDALFEALFEGAGKGFSKDVVKKKSYLAAAVQEEGSQTVLLGAIETFCLKSNPEAAREVALVLKALYDSDFLEEEFIVAWYQQGLKSSNKSSPMWKNVKPFIEWVQSAESEDE 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8097238 8098587 - Bma001082.1 Bma01g00861 75378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00861 449 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Bma01g00861 449 MobiDBLite consensus disorder prediction 147 241 - -
Bma01g00861 449 Pfam eIF4-gamma/eIF5/eIF2-epsilon 373 449 IPR003307 GO:0005515
Bma01g00861 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 449 IPR045196 GO:0003743|GO:0006413
Bma01g00861 449 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Bma01g00861 449 MobiDBLite consensus disorder prediction 285 301 - -
Bma01g00861 449 ProSiteProfiles W2 domain profile. 273 449 IPR003307 GO:0005515
Bma01g00861 449 Coils Coil 159 179 - -
Bma01g00861 449 SMART 542_3 360 447 IPR003307 GO:0005515
Bma01g00861 449 Gene3D - 2 104 - -
Bma01g00861 449 Gene3D - 301 442 - -
Bma01g00861 449 SUPERFAMILY ARM repeat 304 445 IPR016024 -
Bma01g00861 449 MobiDBLite consensus disorder prediction 272 301 - -
Bma01g00861 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 449 - -
Bma01g00861 449 CDD W2_eIF5 304 449 - -
Bma01g00861 449 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Bma01g00861 449 MobiDBLite consensus disorder prediction 148 190 - -
Bma01g00861 449 Gene3D - 105 145 - -
Bma01g00861 449 MobiDBLite consensus disorder prediction 200 228 - -
Bma01g00861 449 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00861 Bma-Chr1:8097238 Bma05g00195 Bma-Chr5:5420292 1.32E-08 dispersed
Bma01g00861 Bma-Chr1:8097238 Bma02g00261 Bma-Chr2:2745855 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00861 K03262 - qsu:112025047 637.106