Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00865 ATGGATGGAATGATGGTGGATTCTATCTCGATTGATTTGACTTCAAATAGCGAGAGTGACAGCTCCAATTGTGCAACAAGAGATCTTAGCTCATCTGAGGTTTCTGCTGATCTTACCCATAATATATCTCCAAAGAGATTCAGGCCCGAGAATTCTGGACAATCAGAAAGATTAAATGTACCATCAAGCCACCCCAATATGCAAGTAAAAGGGTATGGTTCGGATGCTTTTCGAGTTAGTGTTTCAAGCGCCCCCAGCACCTCAAGTCATGGTTCTGCCCCAGACGATTATGATGCTCTGGGTGATGTTTACATATGGGGTGAGATTATCAGTGATAATGTGGTTAAGGTCGGGGCTGATAAAAATACTAATTGTGTGACCTTAAGAGCAGATGTGCTTCTTCCCAAGCTGTTAGAGTCCAATGTAGTATTGGATATTCACCATATAGCCTGTGGGGTCAGGCATTCTGCACTAGTCACAAGGCATGGTGAAGTTTTTACGTGGGGAGAGGAATCTGGTGGAAGGCTTGGCCATGGTGTGAGAAAGAATATCATTCGGCCTTGTATTGTTGAATCATTAGCGGCCATTAACGTCGATTTTGTTGCTTGTGGAGAGTTCCATACTTGTGCTGTTACAATGGCTGGGGAACTTTATACCTGGGGAGATGGCACACATTATGCAGGGCTTCTTGGCCATGGCAGTGATGTCAGTCATTGGATACCAAAGAGGGTTTCAGGTGCTCTTGAAGGACTGCAAATTGCTTCAGTGACATGTGGACCTTGGCATACAGCCTTGATAACATCAATGGGTCAGCTCTTTACTTTTGGTGATGGGACATTTGGTGTATTAGGTCATGGAGATAGAGAAAATGTTTCATATCCTAGAGAAGTGGAGTCTTTATCAGACTTAAGGACAATTGCTGTTGCATGTGGGGTGTGGCACACTGCTGCCATTGTCGAAGTTATTGTGACACAATCCAGTTCTAGTGTTTGTTCAGGGAAGTTATTTACTTGGGGTGACGGCGATAAGAATCGGTTGGGACATGGAGACAAAGGTCCCCGGCTTAAACCAACATGTGTGCCGGCATTAATTGACTACAATTTTCACAAAATTTCTTGTGGCCACAGTTTAACTGTTGGCTTAACCACATCAGGACAAGTTTTCACTATGGGAAGCCCTGTTTATGGTCAGCTTGGGAATCCTCGTGCTGATGGGAAGTTACCATGCTTGGTAGAGGATAGGCTTGTGGGAGAATCCATTGAAGAAGTTGCTTGTGGTGCCTATCATGTTGCGGTACTAAGTCATAGAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGAAGACTGGGTCATGGAGATGTTGAAGATCGAAAAATGCCAACTTTGGTTGAAGGTTTGAAAGAAAGGCACGTCAAACATATTTCTTGTGGTTCTAACTATATGGCAGCCATTTGTCTTCATAAATGGGTTTCAAGTGCTGAGCAGTCTCAGTGTTCTGCTTGTAGACAGGTCTTTGGATTTACACGAAAGAGGCACAACTGCTATAATTGTGGACTTGTGCACTGCCACTCATGCAGTTCCAAAAAAGCATTAAGAGCTGCACTGGCTCCTAGTCCTGCCAAAGGATACCGTGTATGTGATTCTTGTTATACAAAGTTGAACAAGGTATCTGAAGCTAGTAATAATGACAGGAGAAATGCAATACCTCGCCTTTCTGGTGTGAACAAGGATAGGATAGAGAAGAGAGAGCTTAATGTGTCTGATTCTATGCCTTCCAATATGGATTTAATAAAGCAGTTAGATAGCAAAGCAGCCAAACAAGGAAGGAAGGCAGCGGATACATTCTCCCTTGTTCGCTCTTCTCAAGCACCTTCATTGGTGCAGCTTAAAGATGTTTTTTTAGCCACTACTGTTGATTTACAGCGAAAAGCTCCCAAACCGGTGCTTACAGTTTATGGAGTGAATTCTAGGTCTGTGTCACCTCTCTCAAAGAGAAGTCTTCCTCGATCGGCTACTCCTGTTCCTACAGCATCTGGACTCTCTTTCTCTCAAAGTATTTCTGATATCTTGAAGAGAACAAATGAGCTTTTGAATCAAGAAGTGTCAAGTTTACGTGCACAGGTTGAAAGCTGGAGACAAAAATATGAACTCCAGGAGCTAGAGCTTCAAAGATCAATGAAGAAGACACAAGAAGCACTGACCTTAGCTGCAGATGAATCTGCTAAATCTAAAGCTGTGAAAGAAGTCATTAAATCGCTAACTTCTCAGCTCAAGGATATGTCTGAGAGGTTACCTGCTGGAGCTAATGAAACTGAGAATGCAATACCAGCATATCCTCCCAATGGTTCAGAGCCATATGCCATTCACTATTTGGACACAAATGGAACGCGCTATTCTAGATCGGATTCCATTAGCAGCTTCTTGTTGGCTTCTCCCTCGGCCATAGACTCTGCCGCATGGGGAGTAAGTCAATGCATGGCTAATTCACCCCGAGAACTACCTGAACCCAGTGAAATCAATCTTGAACAAGAGCTAAAGTTGCTGCTGCCCAACTGGATTGAGGGTCATAAAGATTTTAGATTGCAAGACGGTGGAAAAGTTGGAGCAAGTTTACCAGAGAAACTTGAAGGAGAATCTGAACCCTCCCGTTACAATGAGAGTAGTGATACTACATTGGCTACTAATGGTAATCAAGTTGAGGCAGAATGGATTGAACAATTCGAACCTGGTGTATATATCACTCTGGTTGCTTTGCAAGATGGAGTTAGAGATCTTAAACGAGTGCGCTTCAGCCGAAGACGATTTGAAGAGCGACAAGCAGAGAATTGGTGGACCGAAAACAGGGAGAAGGTGTACAAGAAATACAATGTTCGGGGAATCGACCAGTCTTCGATTTCGAGTCAAGCAGATCGGAGATCAGAGGGAGCTATCTCACCTTCTTCACGACAACCTTAG 2958 43.58 MDGMMVDSISIDLTSNSESDSSNCATRDLSSSEVSADLTHNISPKRFRPENSGQSERLNVPSSHPNMQVKGYGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEIISDNVVKVGADKNTNCVTLRADVLLPKLLESNVVLDIHHIACGVRHSALVTRHGEVFTWGEESGGRLGHGVRKNIIRPCIVESLAAINVDFVACGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVSGALEGLQIASVTCGPWHTALITSMGQLFTFGDGTFGVLGHGDRENVSYPREVESLSDLRTIAVACGVWHTAAIVEVIVTQSSSSVCSGKLFTWGDGDKNRLGHGDKGPRLKPTCVPALIDYNFHKISCGHSLTVGLTTSGQVFTMGSPVYGQLGNPRADGKLPCLVEDRLVGESIEEVACGAYHVAVLSHRNEVYTWGKGANGRLGHGDVEDRKMPTLVEGLKERHVKHISCGSNYMAAICLHKWVSSAEQSQCSACRQVFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPSPAKGYRVCDSCYTKLNKVSEASNNDRRNAIPRLSGVNKDRIEKRELNVSDSMPSNMDLIKQLDSKAAKQGRKAADTFSLVRSSQAPSLVQLKDVFLATTVDLQRKAPKPVLTVYGVNSRSVSPLSKRSLPRSATPVPTASGLSFSQSISDILKRTNELLNQEVSSLRAQVESWRQKYELQELELQRSMKKTQEALTLAADESAKSKAVKEVIKSLTSQLKDMSERLPAGANETENAIPAYPPNGSEPYAIHYLDTNGTRYSRSDSISSFLLASPSAIDSAAWGVSQCMANSPRELPEPSEINLEQELKLLLPNWIEGHKDFRLQDGGKVGASLPEKLEGESEPSRYNESSDTTLATNGNQVEAEWIEQFEPGVYITLVALQDGVRDLKRVRFSRRRFEERQAENWWTENREKVYKKYNVRGIDQSSISSQADRRSEGAISPSSRQP 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8127306 8132206 - Bma001086.1 Bma01g00865 75382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00865 985 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 4 964 - -
Bma01g00865 985 SMART fyve_4 488 556 IPR000306 GO:0046872
Bma01g00865 985 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 308 318 IPR000408 -
Bma01g00865 985 Pfam Regulator of chromosome condensation (RCC1) repeat 438 485 IPR000408 -
Bma01g00865 985 Pfam Regulator of chromosome condensation (RCC1) repeat 215 266 IPR000408 -
Bma01g00865 985 Pfam Regulator of chromosome condensation (RCC1) repeat 163 211 IPR000408 -
Bma01g00865 985 Pfam Regulator of chromosome condensation (RCC1) repeat 332 379 IPR000408 -
Bma01g00865 985 Pfam Regulator of chromosome condensation (RCC1) repeat 270 318 IPR000408 -
Bma01g00865 985 Pfam Regulator of chromosome condensation (RCC1) repeat 384 433 IPR000408 -
Bma01g00865 985 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Bma01g00865 985 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 215 269 IPR000408 -
Bma01g00865 985 SUPERFAMILY FYVE/PHD zinc finger 489 561 IPR011011 -
Bma01g00865 985 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 149 159 IPR000408 -
Bma01g00865 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 562 IPR013083 -
Bma01g00865 985 ProSiteProfiles BRX domain profile. 902 957 IPR013591 -
Bma01g00865 985 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 964 - -
Bma01g00865 985 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 163 214 IPR000408 -
Bma01g00865 985 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 256 266 IPR000408 -
Bma01g00865 985 MobiDBLite consensus disorder prediction 1 66 - -
Bma01g00865 985 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Bma01g00865 985 SUPERFAMILY RCC1/BLIP-II 100 490 IPR009091 -
Bma01g00865 985 MobiDBLite consensus disorder prediction 864 892 - -
Bma01g00865 985 Coils Coil 688 733 - -
Bma01g00865 985 PRINTS Chromosome condensation regulator RCC1 signature 272 286 IPR000408 -
Bma01g00865 985 PRINTS Chromosome condensation regulator RCC1 signature 165 181 IPR000408 -
Bma01g00865 985 PRINTS Chromosome condensation regulator RCC1 signature 432 453 IPR000408 -
Bma01g00865 985 PRINTS Chromosome condensation regulator RCC1 signature 215 231 IPR000408 -
Bma01g00865 985 PRINTS Chromosome condensation regulator RCC1 signature 374 392 IPR000408 -
Bma01g00865 985 PRINTS Chromosome condensation regulator RCC1 signature 256 272 IPR000408 -
Bma01g00865 985 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 321 IPR000408 -
Bma01g00865 985 Coils Coil 744 764 - -
Bma01g00865 985 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 493 555 IPR017455 -
Bma01g00865 985 Pfam Transcription factor BRX N-terminal domain 739 774 IPR027988 -
Bma01g00865 985 Pfam Transcription factor regulating root and shoot growth via Pin3 901 956 IPR013591 -
Bma01g00865 985 MobiDBLite consensus disorder prediction 9 66 - -
Bma01g00865 985 Gene3D - 324 499 IPR009091 -
Bma01g00865 985 Gene3D - 85 323 IPR009091 -
Bma01g00865 985 MobiDBLite consensus disorder prediction 964 985 - -
Bma01g00865 985 Pfam FYVE zinc finger 489 555 IPR000306 GO:0046872
Bma01g00865 985 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 436 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00865 - - - zju:107435717 1408.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02116 Bma01g00865 CCT
Bma01g00865 Bma04g00032 CCT
Bma01g00865 Bma02g00275 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00865 Bma-Chr1:8127306 Bma04g00032 Bma-Chr4:355715 0 dispersed
Bma01g00865 Bma-Chr1:8127306 Bma02g00275 Bma-Chr2:3190142 0 wgd
Bma01g00865 Bma-Chr1:8127306 Bma02g00266 Bma-Chr2:2855244 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00865 Bma_Chr01 FPKM 1.87886 2.710788 3.036233 3.967729 2.74094 2.539205 3.10212 3.379823 2.950664 3.502052