Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00868 ATGGATTCGCTGGAGTTTCCCGCCGGAAGATCTCCGAGAAGAGAGCTTCAAGGACCTAGACCAACCCCTCTCAGAATTAACAAAGACTCTCACAAGATCTCTAAGAAGCCTCCAATAGCGCCTCACCCGCCATTACACCAAGCTCAGATTCGTCCTCCTGTTATAATCTATACAGTTTCTCCCAAGATTATCCACACCAAGCCTAGCGACTTCATGGACTTAGTCCAGCGTCTTACAGGCTTAGAATCCTCTTCTTCTTCTTCTTCTTCTTTGAGTTTTGGAGCGTCGTTTCCTAGAGCTATTCCCACGGCGGACATTAACAACGGTGGGGCAATGTCCCCGGCAGCTCGTTATGCTACCATAGAGAGAGCGGCTAGGTCAAACCCTGAGCGGAAGAAGATCGATCATAGTAGTGGCCTTCAAAGAGACGTCAGTTCCATCGAAGATATAGAATTGGTGGGTGGTGTCGAGAAGACCGGTTGGTTCCCCGGAATCTTATCTCCGGGGCCGAAGTCTTTCTCACCGATTCCGACGAGCTTTTTTTCTCCAATAACAGCCGATCCGAACTCGCTGAGTTTCTTCTATGATTTGAGTCCCATCCTCCATGGGAACAGAAACTTCATCGAAGGTAATCCTTTCATGCCAAGCCCTTCAAACTTTGTTTCGCCTCCTCATCCGCCCATAGACCTGTTCAACCATTTCTCTGGACTCTAA 714 48.6 MDSLEFPAGRSPRRELQGPRPTPLRINKDSHKISKKPPIAPHPPLHQAQIRPPVIIYTVSPKIIHTKPSDFMDLVQRLTGLESSSSSSSSLSFGASFPRAIPTADINNGGAMSPAARYATIERAARSNPERKKIDHSSGLQRDVSSIEDIELVGGVEKTGWFPGILSPGPKSFSPIPTSFFSPITADPNSLSFFYDLSPILHGNRNFIEGNPFMPSPSNFVSPPHPPIDLFNHFSGL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8142111 8142824 - Bma001089.1 Bma01g00868 75385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00868 237 Pfam VQ motif 58 83 IPR008889 -
Bma01g00868 237 PANTHER F16F4.1 PROTEIN-RELATED 1 234 IPR039607 -
Bma01g00868 237 PANTHER F16F4.1 PROTEIN 1 234 - -
Bma01g00868 237 MobiDBLite consensus disorder prediction 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00868 K20725 MKS1; MAP kinase substrate 1 - pop:7469208 242.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00868 Bma02g00277 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00868 Bma-Chr1:8142111 Bma03g01032 Bma-Chr3:11962342 1.63E-29 dispersed
Bma10g00142 Bma-Chr10:1242878 Bma01g00868 Bma-Chr1:8142111 4.09E-13 transposed
Bma15g00007 Bma-Chr15:146318 Bma01g00868 Bma-Chr1:8142111 5.01E-15 transposed
Bma01g00868 Bma-Chr1:8142111 Bma02g00277 Bma-Chr2:3201246 6.39E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00219 Blo18g00219 . Bda13g01527 Bpe02g01602 Bpe14g00334 Bma01g00868 Bma02g00277 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006596 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 0 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00868 Bma_Chr01 FPKM 32.112698 30.857693 59.075764 55.256302 51.801105 46.50349 56.086655 65.837563 60.341808 68.012657