Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00871 ATGGGTTCTCTTTCGACTGAGAGTTCGAATGTGGAGAAAGAAGGAAGCCATGTTCATGTTGGCGAGGAAGGTAGAACCGGGAAGCTTCAATGGCTTCTGGATAGTCCAGAACCTCCCTCTATGTGGCATGAGTTCATTGGTTGTCTCAAAGAAGCTTTCGTTCCTCGTAGCAACAGACCTTCTTCTTCAGAGAAGCAGAAAGTATCTCTGCGTGTTTTTTCAGTCTTGCGAGGTGTTTTTCCGATACTTAGTTGGGGAAGAAACTACAAGGCTTCCAAGTTTCGGAGTGATGTAATGGCCGGTTTAACTCTAGCCAGCCTTAGCATTCCTCAGAGTATTGGGTATGCTAATTTGGCAAAGCTTGATCCACAGTATGGTTTATACACAAGCGTCGTTCCACCGTTGATATATTCATTACTGGGAAGTTCAAGAGAGCTAGCAATAGGACCAGTGGCTGTGGTTTCTTTGCTTTTATCCTCCATGCTTGAGAAAATTCAAGACCCTTTTGCAGACCCGATTGCCTACAGAAAACTCGTCTTCACCGTCACTTTCTTTGCTGGATCATTTCAAGCAGCGTTTGGATTATTTAGGTTGGGGTTTTTGGTGAATTTTCTTTCGCATGCTGCAATTGTTGGATTCATGGGAGGAGCCGCCATTGTTATAGGCCTTCAACAGCTCAAAGGTCTTCTGGGTATCGCTCATTTCTCCACCAGCACAGATATTATCTCTGTCTTGCACTCTGTTCTTCAATCTTTTCACCACTCATGGTACCCTCTGAATTTTGTTCTTGGCTGTTCATTCTTCATCTTCCTTCTACTGGCGAGATTCATTGAAGCTATTGCAGTGGGAAGATCTTTTGCTTCCATCAATGGCTACCACCTTGATGGTAATAAGGAAATGGTGGCCATGGGGTTCATGAACATCGTAGGCTCTTTCACTTCTTGTTATGTTGCCACTGGTTCTTTTTCGAGGACAGCAGTGAATTTCAGTGCGGGATGTGAGACAATGGTGTCAAACGTCGTAATGGCGATAACGGTTATCGTGTCATTAGAATTGTTCACAAGATTCCTCTACTATACTCCCATGGCTATTCTTGCTTCCGTCATCTTATCGGCTTTGCCGGGACTCATCGATCTGAATGAAGCTTATCACATATGGAAAGTTGACAAGCTTGATTTCTTAGCTTGCCTTGGAGCTTTTCTCGGGGTCTTGTTCGTTTCTGTTGAGATTGGTCTTCTCGCTGCGGTAGCAATTTCATTTGCGAAGATATTACTCAATTTTATTCGACCCGACATTGAATTGGTCGGAAGACTACCAACAACTGATATCTTCTGTAATGTCCGAGAATACCCTATGGCTACAAAAAATGGAGGCATTATCATTATTCGAATTGACACCGGATTCCTTTGTTTTGCTAATGCTAATTTTATTAGAGACAAGGTTATGAGATGGATTGCAAAAGAAGAAGAAAAAGACGATGATGCTATTGCAGTTGAAAACGGGAAAGAAAACATCAAAGAAGTAGTTCTTGATATGACTAGCGTGATGAATGTTGATACTTCGGGAATTATCGCATTGGAGGAACTACATAGGAAGCTTATTTCCATTGGCGTAGAATTAAATATTGCAAACCCAAGATGGGAAGTGATTCACAAGCTGAAGATGGTTAAGTTCATAGACAGAATTGGAGGCAGAGTTTTTGGGTCTGTTGCTGAAGCTGTCCAAGCTTGCTTGGCTACTTAA 1743 42.46 MGSLSTESSNVEKEGSHVHVGEEGRTGKLQWLLDSPEPPSMWHEFIGCLKEAFVPRSNRPSSSEKQKVSLRVFSVLRGVFPILSWGRNYKASKFRSDVMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYSLLGSSRELAIGPVAVVSLLLSSMLEKIQDPFADPIAYRKLVFTVTFFAGSFQAAFGLFRLGFLVNFLSHAAIVGFMGGAAIVIGLQQLKGLLGIAHFSTSTDIISVLHSVLQSFHHSWYPLNFVLGCSFFIFLLLARFIEAIAVGRSFASINGYHLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRTAVNFSAGCETMVSNVVMAITVIVSLELFTRFLYYTPMAILASVILSALPGLIDLNEAYHIWKVDKLDFLACLGAFLGVLFVSVEIGLLAAVAISFAKILLNFIRPDIELVGRLPTTDIFCNVREYPMATKNGGIIIIRIDTGFLCFANANFIRDKVMRWIAKEEEKDDDAIAVENGKENIKEVVLDMTSVMNVDTSGIIALEELHRKLISIGVELNIANPRWEVIHKLKMVKFIDRIGGRVFGSVAEAVQACLAT 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8168212 8171703 - Bma001093.1 Bma01g00871 75388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00871 580 Pfam Sulfate permease family 94 276 IPR011547 GO:0016021
Bma01g00871 580 Pfam STAS domain 450 573 IPR002645 -
Bma01g00871 580 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 19 277 - -
Bma01g00871 580 MobiDBLite consensus disorder prediction 1 20 - -
Bma01g00871 580 ProSitePatterns SLC26A transporters signature. 123 144 IPR018045 GO:0008271|GO:0008272
Bma01g00871 580 PANTHER SULFATE TRANSPORTER 19 277 IPR001902 GO:0015301|GO:0016020|GO:0055085
Bma01g00871 580 ProSiteProfiles STAS domain profile. 467 577 IPR002645 -
Bma01g00871 580 CDD STAS_SulP_like_sulfate_transporter 450 567 - -
Bma01g00871 580 SUPERFAMILY SpoIIaa-like 453 577 IPR036513 -
Bma01g00871 580 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 278 579 - -
Bma01g00871 580 Gene3D STAS domain 429 579 IPR036513 -
Bma01g00871 580 PANTHER SULFATE TRANSPORTER 278 579 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00871 Bma-Chr1:8168212 Bma15g01025 Bma-Chr15:40744562 8.58E-107 dispersed
Bma01g00871 Bma-Chr1:8168212 Bma01g02625 Bma-Chr1:83812419 2.51E-83 wgd
Bma01g00871 Bma-Chr1:8168212 Bma05g01398 Bma-Chr5:53381935 8.64E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00871 K17469 K17470 ming:122073197 462.996