Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00872 ATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGAAGAAATGGATTTGATGGAAGGAGTCGGAGGAGCTCGTCGACCGCCTAGGAGCTTCGGAGTGTCTGAACCACGATGGCGGCTAGACGTGTATCACGTAAGTTGTAGATTAGATAGCGATGGTGATCAAGAAATTTCAAGTAATATTTCTACTTCTGGGTCCTTTGGGGAAGCAGCTGATGAAAGAGTTCCGCCACCACACAAGAGAGAATTATACAATAAATTTGAGCCATGTTTCAGGCTTGAAGATTTGAATTTGGATGTTAAAAAGAAGGGGGAGGACACGAGTGACAGATATCTTACTGAGAAGCAAGAAAACTCATATGTTTTTATTCATGAAATTATATTTTCTACTGTCGACAAACCAAAGCTTCTAAGCCAGCTTTCTTCATTGCTTTCTGATATAGGACTTAACATTCGCGAAGCGCATGTATTCTCGACAAATGATGGCTATTCCTTGGATGTTTTTGTGGTCGATGGATGGCCTATTGAGGATACAGATGGTTTATATGACGCCATGCAAAAAGCAATTGCTAGAAGCGAGGGTTCATGGTCTGGTTCGTCTAGTTGTCATTCATACTTGGAGAAAGCACTGGCATCCCTACCAAAATCTTTGGGTTGGGAAATAGACAGAAGATTATTAAAGATTGGTGAACGAATTGCATCTGGATCTTGTGGAGACTTGCATCGAGGAGTATACCTTGGTCAAGATGTAGCTGTTAAAATTCTTAGATCTGAGCATTTAAATGATGCTCTGGAAGATGAATTTGCTCAAGAAGTGGCAATTCTGAGAGAGGTCCAGCATAAAAATGTTGTTGGTTTCATCGGGGCGTGTACAAAGTCTCCTCATTTGTGCATAGTAACAGAATATATGCCAGGAGGGAACCTTTACGATTATTTGCATAAGAATCATAATGTCTTAAAGCTCTCTCAACTATTAAAATTTGCTATCGATGTCTGCCAAGGAATGGAGTACTTGCATCTAAACAGCATTATTCATAGAGATTTAAAGACAGCAAATTTGCTAATGGACACTCAAAATATTGTTAAGGTTGCTGATTTTGGGGTTGCGCGATTCCAAAACCAAGAGGGAGTGATGACTGCTGAAACAGGAACTTATAGATGGATGGCCCCTGAGGTTATAAACCACCAGCCTTATGATCAGAAGGCAGATGTTTTCAGTTTTGCTATCGTAATGTGGGAACTAGTGACAGCAAAGATTCCTTATGATTCCATGACTCCTCTACAAGCTGCTCTTGGAGTGAGACAGGGATTACGTCCAGATCTTCCCAAAAATGCACACCCCAAACTGTTGGAACTAATGCAGAGATGTTGGGATGATGTTCCTCAAAATCGGCCTTCCTTCACCGAGATAAAAGCTGAACTTCAAAATATTCTCCAAATTCAGGTAGCTTTGATTTCTTCTTTTTTTGTTCTTTTTTTTTTTTTTAATTTTCTTCCAATTCTTGTTCTCTTTGGAAATTTCCCTTTCCCTTCCATGCTTAATTCTTAG 1620 37.47 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEMDLMEGVGGARRPPRSFGVSEPRWRLDVYHVSCRLDSDGDQEISSNISTSGSFGEAADERVPPPHKRELYNKFEPCFRLEDLNLDVKKKGEDTSDRYLTEKQENSYVFIHEIIFSTVDKPKLLSQLSSLLSDIGLNIREAHVFSTNDGYSLDVFVVDGWPIEDTDGLYDAMQKAIARSEGSWSGSSSCHSYLEKALASLPKSLGWEIDRRLLKIGERIASGSCGDLHRGVYLGQDVAVKILRSEHLNDALEDEFAQEVAILREVQHKNVVGFIGACTKSPHLCIVTEYMPGGNLYDYLHKNHNVLKLSQLLKFAIDVCQGMEYLHLNSIIHRDLKTANLLMDTQNIVKVADFGVARFQNQEGVMTAETGTYRWMAPEVINHQPYDQKADVFSFAIVMWELVTAKIPYDSMTPLQAALGVRQGLRPDLPKNAHPKLLELMQRCWDDVPQNRPSFTEIKAELQNILQIQVALISSFFVLFFFFNFLPILVLFGNFPFPSMLNS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8184087 8195718 + Bma001094.1 Bma01g00872 75389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00872 539 CDD STKc_MAP3K-like 256 498 - -
Bma01g00872 539 Coils Coil 36 39 - -
Bma01g00872 539 MobiDBLite consensus disorder prediction 78 99 - -
Bma01g00872 539 Coils Coil 1 1 - -
Bma01g00872 539 Pfam Protein tyrosine and serine/threonine kinase 250 498 IPR001245 GO:0004672|GO:0006468
Bma01g00872 539 SUPERFAMILY Protein kinase-like (PK-like) 243 524 IPR011009 -
Bma01g00872 539 Gene3D Transferase(Phosphotransferase) domain 1 328 512 - -
Bma01g00872 539 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672|GO:0006468
Bma01g00872 539 PRINTS Tyrosine kinase catalytic domain signature 361 379 IPR001245 GO:0004672|GO:0006468
Bma01g00872 539 PRINTS Tyrosine kinase catalytic domain signature 407 417 IPR001245 GO:0004672|GO:0006468
Bma01g00872 539 PRINTS Tyrosine kinase catalytic domain signature 426 448 IPR001245 GO:0004672|GO:0006468
Bma01g00872 539 PRINTS Tyrosine kinase catalytic domain signature 324 337 IPR001245 GO:0004672|GO:0006468
Bma01g00872 539 SUPERFAMILY ACT-like 148 215 IPR045865 -
Bma01g00872 539 SMART serkin_6 250 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00872 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Bma01g00872 539 Gene3D Phosphorylase Kinase; domain 1 240 327 - -
Bma01g00872 539 ProSiteProfiles Protein kinase domain profile. 250 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00872 539 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 94 504 - -
Bma01g00872 539 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 94 504 - -
Bma01g00872 539 ProSiteProfiles ACT domain profile. 149 223 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00872 Bma-Chr1:8184087 Bma02g00265 Bma-Chr2:2816445 0 dispersed
Bma01g00863 Bma-Chr1:8108313 Bma01g00872 Bma-Chr1:8184087 0 proximal
Bma01g00872 Bma-Chr1:8184087 Bma02g00273 Bma-Chr2:3146587 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66267 PF07714 PK_Tyr_Ser-Thr 2.60E-73 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00872 - - qlo:115975047 674.855