Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00875 ATGAAAACTGTTGTAAATGTTCTCTCTCTCAACCTTCTTTGGATTTTCTGGCAATTTGAAAATGGGTTTTTCTGTGGGACAGCTGCTGTGGCGTGGGAAGCAGGGAAGCCATTGGCGATCGAGGAAGTGGAGGTGGCGCCGCCGCAGGCAAATGAAGTTCGTGTGAAAATACTCTACACTTCCCTTTGTCACACCGATGTCTACTTCTGGGAAGCCAAGGGACAGAACCCTATGTTTCCAAGAATTTTGGGTCACGAAGCAGGAGGGATTGTTGAGAGTGTCGGAGAAGGAGTGACAGATTTGAAACCAGGCGATCATGTTCTTCCCGTCTTCACCGGAGAATGCTCGGAATGTGCTCACTGTAAGTCCTCAGAGAGCAACATGTGTGATTTGCTGAGAATTAACACAGACAGAGGAGTGATGATTAGCGATGGCAAATCAAGATTCTCCATTAATGGCCGACCAATTTACCATTTCGTCGGGACTTCCACTTTCAGCGAATACACTGTCGTTCATGTTGGATGCCTCGCCAAAATCAACCCGTCTGCGCCATTAGACAAAGTCTGTGTTCTTAGCTGTGGAATCTCCACTGGCTTTGGCGCCACAGCTGCCGAAGGGGCGAGAGTTTCGGGGGCTTCTAGGATAATCGGAGTTGATTTGAACTCTAGCAGATTTGAAGAAGCTAAGAAATTTGGAGTGACTGAGTTTGTCAACCCAAAAGACCATAAAAAACCAGTTCAAGAGGTTCTTGCCGAGATGACGAACGGAGGTGTCGATCGAAGCGTTGAGTGCACTGGGAATATAGATGCCATGATTTCAGCATTTGAATGCGTTCACGATGGGTGGGGTGTGGCTGTTCTTGTGGGGGTACCTCACAAAGATGCTGTTTTCAAAACTCACCCCATGAATGTCCTGAATGAGAGGACTTTGAAGGGGACTTTCTTCGGAAACTACAAGCCTCGAACTGATCTTCCATCCGTCGTTGAAAAGTACATGAACAAGGAGCTTGAGTTGGAGAAGTTCATAACGCATCAAGTTCCGTTCGGAGAGATCAACAAGGCCTTTGATTACATGCTCAAGGGGGAGGGTCTAAGGTGTATTATTCGAATGGAAGACTGA 1119 47.1 MKTVVNVLSLNLLWIFWQFENGFFCGTAAVAWEAGKPLAIEEVEVAPPQANEVRVKILYTSLCHTDVYFWEAKGQNPMFPRILGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECSECAHCKSSESNMCDLLRINTDRGVMISDGKSRFSINGRPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCVLSCGISTGFGATAAEGARVSGASRIIGVDLNSSRFEEAKKFGVTEFVNPKDHKKPVQEVLAEMTNGGVDRSVECTGNIDAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPMNVLNERTLKGTFFGNYKPRTDLPSVVEKYMNKELELEKFITHQVPFGEINKAFDYMLKGEGLRCIIRMED 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8226135 8228200 + Bma001097.1 Bma01g00875 75392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00875 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 184 361 IPR036291 -
Bma01g00875 372 Gene3D - 314 361 - -
Bma01g00875 372 Gene3D - 30 197 - -
Bma01g00875 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 84 98 IPR002328 GO:0008270|GO:0016491
Bma01g00875 372 SUPERFAMILY GroES-like 27 204 IPR011032 -
Bma01g00875 372 Gene3D - 202 313 - -
Bma01g00875 372 PANTHER ALCOHOL DEHYDROGENASE 1 27 202 - -
Bma01g00875 372 PANTHER ALCOHOL DEHYDROGENASE 1 200 370 - -
Bma01g00875 372 SUPERFAMILY GroES-like 320 369 IPR011032 -
Bma01g00875 372 Pfam Zinc-binding dehydrogenase 199 323 IPR013149 -
Bma01g00875 372 PANTHER ALCOHOL DEHYDROGENASE 27 202 - -
Bma01g00875 372 PANTHER ALCOHOL DEHYDROGENASE 200 370 - -
Bma01g00875 372 CDD alcohol_DH_plants 28 369 - -
Bma01g00875 372 Pfam Alcohol dehydrogenase GroES-like domain 51 176 IPR013154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00875 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - cit:102616862 652.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00875 Bma-Chr1:8226135 Bma07g01033 Bma-Chr7:41786114 2.53E-111 dispersed
Bma01g00875 Bma-Chr1:8226135 Bma06g00315 Bma-Chr6:5280906 5.37E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00875 Bma_Chr01 FPKM 1.712451 1.897988 1.843634 1.89234 3.620708 3.960975 2.753822 1.91657 1.64467 1.797368