Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00876 ATGACAACTTCAGGGCTGCCCACTCCAATAGGTGGTGCCCAATCTGTGTCATCTTCATATTTAAGATCAAATTCTGGAATGCTGGGAGCTCAAGGGGGTTCTTTACCTTCGCAGTCGTCATTTCCTTCACTTGTATCACAACGCAGTCAGTTTAGCAATTTGAATATGCTTGGTAATATACCCGATGTTTCTTCTTTCATCAATCAGTCTTTTGCAAATGGGGGTCCAAATTCTGGGCTTTCAGTCCCTGTAAATGGTCAGCATGGAGGTGTTGACCCTGGTGCTGAGCTGGATCCACTGTCCAGTGTTGAAAATGGAATGAATTTTAATAATTCTGCGGCGTCATTTGTAGCATCAAACATGGGAAACCCTGGTTCTTCCTGTCAAAACCAGGGTCCCCAATTTATTAATCTTTCTGGTAACCAGCTATTAGCAGAGCAGCAGCTCGAAGCTCAGAAGTTCCAGCATGGTCAGCCGTCAATGCAACAGTTTTCTCCTTCTTGCAGCACCTTGCAGCCACCACAGCACCAATCGCAATCAATTAGAGGAGGCATAGGTGACAACAGTATTGAATTCTGGAGAAAGTTTGTTGCTGAGTACTTTGCTCCCAATGCCAAAAAGAAGTGGTGTGTTTCCATGTATGGAAGTGGTCGGCAGACAACTGGAGTGTTTCCCCAGGATGCATGGTACTGTGAAATATGCAATCGCAAGCCTGGCCGTGGTTTTGAAGCGGCTTTTGAAGTCCTTCCCAGGCTTTTTAAAATCAAGTATGAAAGTGGTACTTTGGAGGAACTTCTTTTTGTTGATATGCCATGTGAATATCATAATTCATCTGGTCAGATTGTCTTGGATTATGCAAAAGCTACGCAAGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGTGATGGCCAACTTCGAATAGTTTTCAATACAGACCTAAAGATTTGTTCTTGGGAGTTTTGTGCGCGACGTCATGAAGAGCTCATTCCTCGAAGATTATTGATACCCCAGGTTAGTCAGCTTGGGGCAGCAGCGCAAAAATATCACACTACTATGCAAAGTGCATCATCCAATTTATCTGCGCCAGAGTTGCAAAACAACTGCAATATGTTTGTGGCGTCAGCCCGGCAACTGGCTAAAGCTTTGGAAGTTCCGTTAGTAAATGATTTAGGGTATACAAAAAGATATGTTAGGTGCCTTCAGATATCAGAAGTTGTTAATAGTATGAAAGACCTTATTGATTACAGCAGAGAAACAGGGAGTGGGCCAATGGATAGTTTAACCAAATTTCCTCGAAGAAGTGCATCATCTGGGTTCCCAACTCAAGCACAACGGGCAGAAGAACTGCAAAAGCAGCAACAGCAGCAGCAACAACCACAAACGTCTGTTCAGGACACTAACAATGACCATAGCCCCGTTCAACTCTCGACAAGTAATGGCATGGTTATGGGCTGTATGAATAATGCCATCAACTTGGCCTCAACTCCCACCAATGCAAGCACCATTGTTGGGTTGTTACACCAGAATTCAATGAACTCAAGACTACAGAATCCAATGAATAATGGTTTAAACAGCCCTTATGGAGGAAGTTCGATTCCATTTTCATCTCCACAAGCACGACCGAACACGTCTCAATTCCAACCTCCAACACCCTCATCGATGAATACCCAGTCACAGACATCACAGAATGCTGTAGCATCATCGGCTGCAAATCACTTGAATAACACAAATTCTTCACCACATATTCCAATTCCTTTGCACCAACCATCAGTTTCTGGGGATGATCAGAATGATTCACAGAGTTCTGTCCAGAAAATCTTGCAGAAAATGATGTCGAACCAAATCACCGACCCAGGGGGTGGCTTGGTCAGTGCCGGTTCTCTGGTAAATGACGGGAAAAATGTGAATGGGATTTTACCGACGACAGGAAGTGTAAGTCTCAATGGTTTGGCAAATGGAATGGCCATAGGCGGGGGGCTTGGTCAGTCTGCAATGATTGTTAATGGAATGCGATCTGCAGTTGGAAACAACTCGGTTATGAACGGAAGAATGGGAATGGCTGCATTGGCTCGAGATCAAAGCATGAATTTTCAACATCAGGATTTGGGAAACCAGCTTCTGAATGGTTTAGGAGCAGGTAATGGGTTTAATAATAATCTTCCATTTGATTGGAAATCATCGCCATGA 2187 43.85 MTTSGLPTPIGGAQSVSSSYLRSNSGMLGAQGGSLPSQSSFPSLVSQRSQFSNLNMLGNIPDVSSFINQSFANGGPNSGLSVPVNGQHGGVDPGAELDPLSSVENGMNFNNSAASFVASNMGNPGSSCQNQGPQFINLSGNQLLAEQQLEAQKFQHGQPSMQQFSPSCSTLQPPQHQSQSIRGGIGDNSIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDAWYCEICNRKPGRGFEAAFEVLPRLFKIKYESGTLEELLFVDMPCEYHNSSGQIVLDYAKATQESVFEQLRVVRDGQLRIVFNTDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYHTTMQSASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGSGPMDSLTKFPRRSASSGFPTQAQRAEELQKQQQQQQQPQTSVQDTNNDHSPVQLSTSNGMVMGCMNNAINLASTPTNASTIVGLLHQNSMNSRLQNPMNNGLNSPYGGSSIPFSSPQARPNTSQFQPPTPSSMNTQSQTSQNAVASSAANHLNNTNSSPHIPIPLHQPSVSGDDQNDSQSSVQKILQKMMSNQITDPGGGLVSAGSLVNDGKNVNGILPTTGSVSLNGLANGMAIGGGLGQSAMIVNGMRSAVGNNSVMNGRMGMAALARDQSMNFQHQDLGNQLLNGLGAGNGFNNNLPFDWKSSP 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8235440 8240428 + Bma001098.2 Bma01g00876 75393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00876 728 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 187 726 - -
Bma01g00876 728 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 186 - -
Bma01g00876 728 PANTHER LIM DOMAIN-BINDING PROTEIN 1 186 IPR029005 -
Bma01g00876 728 PANTHER LIM DOMAIN-BINDING PROTEIN 187 726 IPR029005 -
Bma01g00876 728 MobiDBLite consensus disorder prediction 417 480 - -
Bma01g00876 728 MobiDBLite consensus disorder prediction 162 181 - -
Bma01g00876 728 MobiDBLite consensus disorder prediction 430 480 - -
Bma01g00876 728 Pfam LIM-domain binding protein 186 427 IPR029005 -
Bma01g00876 728 MobiDBLite consensus disorder prediction 513 603 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00876 - - - pper:18767394 683.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00876 Bma-Chr1:8235440 Bma14g02063 Bma-Chr14:43958795 5.17E-104 dispersed
Bma01g00876 Bma-Chr1:8235440 Bma10g01195 Bma-Chr10:42267747 3.87E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1200 . . . . . . . . Cmo04g02535 Cmo15g00639 . . . . . . . Bhi04g02144 . . . . . . Cla08g00655 Cam08g1085 Cec08g0671 Cco08g0780 Clacu08g0789 . Cre08g0594 Cone4ag1452 Cone7ag1480 Cone17ag0802 Cone20ag0406 . . . Cme03g00421 Blo17g00225 Blo18g00225 . Bda13g01540 Bpe02g01598 Bpe14g00324 Bma01g00876 . . . . . . Car04g02333 Car15g00580 Cpe01g02095 . . . . . . . . . . . . . . . Lsi08g00515 . Chy03g00579 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001301 2 5 2 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 1 2 2 2 2 7 3 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00876 Bma_Chr01 FPKM 1.04023 0.824594 0.352561 0.450206 2.358159 2.498979 2.649948 0.0 0.077288 0.0