Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00877 ATGTCTTTAGTTAGATCGACAAAGTCATCCAACACGTTACAGAGAATTTCAAACAATTACGCATTGAACGATAGAGATGACAGTTCTGGGTCAACAACCCACATACTCGGCTCTGATCAGATATCAAAAATGTACTCGGATGACTTTCAGAGCGATGATGGTTACGAGAAGTATTTATTTGATTCCATGGCTGCGGAACTAAACGAAGCTAGTTCATTTTCCTTCGTGAATAGTCAACCTTTTGATTCTCCATTCGATTCTAGCGGAAATCTCAACCCGTATCATTCAGATTCAGAATCACCTTGCCTGCAAGATTTAATCTCAGATCCTGTCTACTACGACGAAAATCAAATCCGATTACAGCTACAAGAGCTAGAGAGGGTGCTGCTGGGCGAAAACGATTTTGCAGATGATGACATGTTTATCAGCCAAAGCTCAGAAATCAGTACCGAATCGGTCGTTCCAATTCAGAATGTGTTAACTCAGAATTCGCACGAGGAATTTCCATCCCCAGATTCTGCAAGAACTCCTCAAAAATTGCTCTTAGATTGTGCAGAATTGCTCTCCGAAGGAAACATCAAAGGAGCATCTGGAATGATAAACGAGTTACGACAGATGGTCTCGATCCAAGGAGATCCTCCTCAGAGAATAGCTGCATACATGGTGGAAGGCCTGGCAGCTCGAATTGCTGCCTCGGGAAAATGTCTTTACAAAGCATTAAAATGCAAAGAGCCTCCATCTTCCGACCGCCTGGCAGCCATGCAAGCCTCCAAGACGTCAATTGTCACTCCCTCAATACTGGAGTGCCGTCCTGATGAAGCACTTATAGTAAACTGCGCTTTTCAACTTCACCACATGCCAGACGAAAGTGTTTCGACGTTAAACCTCCGAGACCAGCTCCTTCGAATGGTAAAGAGCTTGAATCCGAAAGTTGTGACAGTTGTGGAACAAGATGTGAACACCAACACTGCCCCATTTTTTCCAAGATTCATGGAAGCCTACAATTATTATTCTGCAGTGTTCGAATCTCTTGACGCCACTCTTCCAAGAGAAAGCCAAGACAGAATGAACGTCGAAAGGCATTGCCTCGCAAGAGACATAGTGAATATAGTTGCGTGTGAGGGGGAGGAAAGAATCGAGCGATATGAAGTTGCGGGAAAATGGAGGGCGAGGCTGACAATGGCTGGTTTCGTCTCGTGTCCGATGAGCTCAGACATAATCAAATCGATCAGGGATCTCATTATGGAGTACTGTGAGAGGTACAAAGTGAAGGAGGAAAAGGGGGCTCTTCATTTTGGCTGGCAAGACAAGAGCTTGATCGTTGCTTCTGCGTGGAGGTAA 1341 44.74 MSLVRSTKSSNTLQRISNNYALNDRDDSSGSTTHILGSDQISKMYSDDFQSDDGYEKYLFDSMAAELNEASSFSFVNSQPFDSPFDSSGNLNPYHSDSESPCLQDLISDPVYYDENQIRLQLQELERVLLGENDFADDDMFISQSSEISTESVVPIQNVLTQNSHEEFPSPDSARTPQKLLLDCAELLSEGNIKGASGMINELRQMVSIQGDPPQRIAAYMVEGLAARIAASGKCLYKALKCKEPPSSDRLAAMQASKTSIVTPSILECRPDEALIVNCAFQLHHMPDESVSTLNLRDQLLRMVKSLNPKVVTVVEQDVNTNTAPFFPRFMEAYNYYSAVFESLDATLPRESQDRMNVERHCLARDIVNIVACEGEERIERYEVAGKWRARLTMAGFVSCPMSSDIIKSIRDLIMEYCERYKVKEEKGALHFGWQDKSLIVASAWR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8245315 8246961 - Bma001099.1 Bma01g00877 75394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00877 446 ProSiteProfiles GRAS family profile. 168 446 IPR005202 -
Bma01g00877 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 256 445 IPR005202 -
Bma01g00877 446 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 133 255 IPR005202 -
Bma01g00877 446 Pfam GRAS domain family 255 446 IPR005202 -
Bma01g00877 446 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 256 445 IPR030011 GO:0003700|GO:0005634
Bma01g00877 446 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 133 255 IPR030011 GO:0003700|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02109 Bma01g00877 CCT
Bma01g00877 Bma01g02109 ECH
Bma01g02109 Bma01g00877 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00877 Bma-Chr1:8245315 Bma01g02109 Bma-Chr1:77250880 1.51E-52 dispersed
Bma01g00877 Bma-Chr1:8245315 Bma12g00842 Bma-Chr12:38829958 6.46E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56685 PF03514 GRAS 5.50E-69 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00877 - - mnt:21388856 336.65