Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00878 ATGGTGAAAGAAACTGAGTTTTATGATGTTCTTGGTGTTCTTTCATCGGCGTCTGATGACGAAATTCGCAAGGCTTATTACCTTAAGTGTTTCATGGAAATGGTTTATCCAATGCAGGCAAGACAAGTTCATCCGGATAAGAATCTGAACGACCCAAAGGCTGCTGAAAATTTTCAGTTATCTAATAAATCATGCAATGGGCAGGTACTTGGGGAAGCTTATCAAGTTTTAAGCGACGCTGTTCAGAGAGACTTGTACGATCGAAATGGAAAACACTGCATCTCTAGGGAAACCATGCTTGATCCAACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATCATTCGAGGATTATATTGGACATTTAGCTGTCGCATCAATGGCTTCTTCTGAATTGTCCAGTGAAAGTGAAAATTTAGAGAAGCTACATGATAAGCTGAAGGCAAGTCATAATATCTATTTGAACCTTTTCAATGTTGGTTTATGTTATATCGTTAGTTTCGCCATTTCGAACCTGTACTTTACGGCACTACTTTGTTTTACGCAGGCTGTACAAAAAGAGAGGGAAGAAAAACTAGCAAGATTCCTGAAGGCTTTTCTTACTCAATATGTTCAAGGTGACAAAGAAGGGTTTTTACGCCGCACTGTATCTGAAGCAAGACGACTTTCTAACACAACTTTTGGAGTCAACATACTAAGCACGATTGGCCGTGTATATTCGAGACAGGCAGCTCAAGAGCTCGGAAAGAAAGCCATTTATCTTGGGGTGCCATTTTTGGCGGAATGGGTCCGAAACAAGGGCTATTTTTGGAAGTCGCAGATAACAGCAGCAAAAGGCATGAGATTTATAAGATCTAATTCAAATCCAGGTGCTTTTCAGCTGCTACAACTTCAAGAAGACATGCGTAAGCAATTTAAAAATGTGCCTGAAAACAATGTTGAATCACACATACGCCTGAATAAAGACACAATGATGAACTCACTGTGGAAGTTAAATGTAGTGGACATAGAAATAACCCTTATACACGTGTGTCATATGGTGAGTTCTCTGTCAAATCATTTGGATAAATTTTTGGCTCAAGTGATGCTTCTCATGACTTTTTATATATTCCAGGTGCTGAGGGATAGCTCTGTGAGAAAGGAAGAGCTTAAAGCTCGCAGTTTGGCTCTGAAAATTCTGGGAAAAATCTTTCAGTATTCATTCACTGCTTATTTGTTGTGTTTTCAGCAGGATAAAGTTGGAAAAAATGGTGAATCGTCGAGAAGAAAAGGCGTTGAAGAAGAAGAAGATGAAACCAGTTCCGATAGCGATGAAGAGGAGTCGCCTAGAACGCTATCATATCGAACGCCTTTTCTCACACAGGGTATTGGCAGACTCTTCAAATGCCTCTGCAACCCTGCATTTGATGTAGATGATGATGAAATTGTGTACAGAAGCAAATGA 1443 39.85 MVKETEFYDVLGVLSSASDDEIRKAYYLKCFMEMVYPMQARQVHPDKNLNDPKAAENFQLSNKSCNGQVLGEAYQVLSDAVQRDLYDRNGKHCISRETMLDPTAVFALLFGSESFEDYIGHLAVASMASSELSSESENLEKLHDKLKASHNIYLNLFNVGLCYIVSFAISNLYFTALLCFTQAVQKEREEKLARFLKAFLTQYVQGDKEGFLRRTVSEARRLSNTTFGVNILSTIGRVYSRQAAQELGKKAIYLGVPFLAEWVRNKGYFWKSQITAAKGMRFIRSNSNPGAFQLLQLQEDMRKQFKNVPENNVESHIRLNKDTMMNSLWKLNVVDIEITLIHVCHMVSSLSNHLDKFLAQVMLLMTFYIFQVLRDSSVRKEELKARSLALKILGKIFQYSFTAYLLCFQQDKVGKNGESSRRKGVEEEEDETSSDSDEEESPRTLSYRTPFLTQGIGRLFKCLCNPAFDVDDDEIVYRSK 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8249397 8252309 + Bma001100.2 Bma01g00878 75395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00878 480 PRINTS DnaJ domain signature 36 51 IPR001623 -
Bma01g00878 480 PRINTS DnaJ domain signature 8 26 IPR001623 -
Bma01g00878 480 PRINTS DnaJ domain signature 82 101 IPR001623 -
Bma01g00878 480 PRINTS DnaJ domain signature 62 82 IPR001623 -
Bma01g00878 480 ProSiteProfiles dnaJ domain profile. 6 90 IPR001623 -
Bma01g00878 480 SMART dnaj_3 5 82 IPR001623 -
Bma01g00878 480 MobiDBLite consensus disorder prediction 415 429 - -
Bma01g00878 480 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 464 - -
Bma01g00878 480 Pfam X-domain of DnaJ-containing 185 347 IPR026894 -
Bma01g00878 480 SUPERFAMILY Chaperone J-domain 2 120 IPR036869 -
Bma01g00878 480 Pfam DnaJ domain 7 87 IPR001623 -
Bma01g00878 480 Gene3D DnaJ domain 1 104 IPR036869 -
Bma01g00878 480 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 464 - -
Bma01g00878 480 MobiDBLite consensus disorder prediction 415 448 - -
Bma01g00878 480 CDD DnaJ 6 79 IPR001623 -
Bma01g00878 480 Coils Coil 129 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00878 - - - zju:107423466 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00878 Bma-Chr1:8249397 Bma04g00311 Bma-Chr4:2460464 1.38E-114 dispersed
Bma01g00878 Bma-Chr1:8249397 Bma01g02435 Bma-Chr1:81994324 1.22E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00878 Bma_Chr01 FPKM 0.056889 0.0 0.066655 0.0 0.0 0.0 0.0 0.0 0.0 0.0