Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00880 ATGTATGTTCACTTTGGTCCAGTTGGTGATGCATGGAAGGTTTTCGAAGATATCAGGGAGAAGAATACCATATCTCGGAATATACTCTTGAAGGGTTTGTTGAGATTTGACCATATCGAACGAGCATGCATCCTGTTTGATGAAATGCCACAAAGAGATGTTGTTAGTTGGAACTCCATGATTTCTGGCCTGAATTCGTGTGGATTTAATGAATATGCAGTTTCCTGTTTTATGGAAATGCAAATAGCTGGATTTAGGCCAAGTGGGTATACATACTCAATTTTGGTCTCAATTGCTCGGTGTACTCGTCAAGGGAAGGAAATTCACGGCAGTATCATACGAACTGGTATGATTTTGCCAAATATAGTTCTTGGAAATTCGTTGATTGATATGTATGGAGGGTTTGGCCTAATCGATTATGCATTTAACGTATTTTACACGATGAAGGATGTGGATATTATCACTTGGAACTCTTTGATTTTGAGTTGCCATAGATCAGGCCTCGACGAGTTGGCACTAGAACAGTTCTGTTTGATGAGATATACAGAGCACTCGCCCGATCAATTCACGTTCTCCACGGTGATTAGTGTTTGTTCTTGGTTGCAGAATTTGGAAATGGGTAAGCAAATCTTTGTCTTTTGCTTCAAACTAGGATGTTTTTGTAATAGCATTGTCTTGAGTTCTACTATTGACATGTTTTCCAAATGCAACAGCTTGGTTGATGCAGTGAGACTCTTTGATGAACTAAATAAGTGGGATTTAGCCATTTGTAATTCGATGATTTCGAGCTATGCCCGACATGGTTTTAGCCACGATGGCTTACGGATTTTCGTAAGTGCCTTGAGGCACAACCTCCGGCCAAGTGAATTTACACTTAGCAGTGTGTTGGGCTGTGTCTCAGTCTTGATGCCGACGGAATTGTGTATGCAAATTCATTCTTTTGTCGTAAAATTGGGATTTGAGTACGACCCTATTGTTGCCAATTCACTAGTTGATATCTATGCGAAAGTTGGACTGATCGGGAGCGCGATAGACTTATTCAAGAACATGGAAGTGAAAGACTTAATATCATGGAATACATTTCTTATGGGTTTGTCGACCAACGGTAGAGAATACGAGGTTGTACAAATTTTCAAAGAAGCTGCCGGAAAAGGCCTACGAGTCGATAGTATAACTCTTGCTGTCGTTTTATTAGCCTGCAACTATGGCGGTTTTGTCGATGAAGGATTGACCATCTTCTCGTCAGTGGAAAAAGATTATGGAATCGTGCCTGCCGATGAGCATTACGCTTGCATAGTGAACTTATTGGGTCGAGCTGGTAAACTCGAAGAAGCCATGGATATCATCTCAAAAATGCCGTATTTACCGAGTAGTACGATTTGGAGGTCTCTTCTCTGTGCTTGTACAGTTGATGGAGACTTGAAAATCATCGAAAGCGTTGCAGAGAGGGTAATGGAAATGGACCCTCGATCGGATCTTCCTCACGTTGTGTTGGCTCGAGCTTATCAGACGAGAGGGATGTGGGAAAGGATGATTCGGGCAATATATGCTGTCAGACATAAATCTTCGGAGAAATCGAGTGGCTCCAGTTGGGTTGTAATGAAAAACATTGTCTGTGTTTTTAAGGACAGCCAATTGCAAGCGTCAATGGCACATTCTCATTCGCCCTTTTATGTGGTCGTCGCCTATGATGCAACTAGGGATCAAACCGAGAATGATCTTAAACTTACTGTCAATGCGATTCGAATGGTTGGCGACATTCTTCGCAGAGGTGCCACTCTTATTATCCTTGGAGTTCTTCATAAAGTTCCCCACCCCATGGGATACCAACTAAAAGCATGCCTTGATTCTTTTGCTGGAACCAGATTTCAAGCAATTGAGGAAAAAGTTGGAGAGAAAGTTGATGAATATGTAACCCTGTTGCTGGAAACTGCTGAAAAGTGTGATATTGAAGGGGTCAAAGTTCAAGTGAGAATTACTGCTGGATATCCCATTAGGCAGGTTGTTTTACAAGAGGTTATGGCGTGTAATGCAAAATGGGTAATACTCGACAGGCACCTTCGATGGGATTTGAAGTTTTACCATAAATGGATACCTTGTAAGATTGGTTTGATTCAAAACAGCTGGTCTGTTGAGATTGTTAGATCTTATGTCACAAGCGAAGCAGAGACTATAGAACAAAAAGTGGTCTATTCTATGTCCAAGCAGGTTTCATCATCAAATAGTAATACTAGTATCAACGAGCAGACGTCTATCTCTTACGACAGCTTTTCAAATAGTAATACTAGTATCAATGAGCAGACGTCTATCTCTTGCAACAGCTTTTCATTGAATAGTAGTTCCTTGGATTCGATTAATGACATCTCAAGTGCCTCATGGAAATTGGAAGATCCGATGATTTTGAATTCTTCTAGTAAGAAAGAAAAATCAGGTAGTCCATCTTCCAAGGGAGAAAGTTGGCATTCGACTGCTCCACAGACTGGTCGAAGCCATAGCAAAGATGTATCCAAACAGAGGGCATCAAAAGCGCCAATCCTTTGTTCTGCTTGTGAGACAATGAATGAGCTGTCCTTCAAGGACTCCATGAAATTCAACTATACCGACATAAAGCTCGCAACTTCCAATTTTGCAAAGGAAAATTTATTAGGAGAGGGTGGATTTGGTCGTGTATTTAAGGGCGAGCTCAAAGACAGACAGCTCATTGCAGCTAAGGTTCGAAAAGAAGCAAGTTCTCAAGGATTAGCTCAATTTCAATCTGAGGTGCTCATCTTAAGTTATGCTCGGCACAAGAACATCGTTATGTTGTTGGGTTATTGCTGCAAGGAAAACTTAAATATTCTGGTTTACGAGTATATATGCAACAAATCTCTCAATTGGCATTTATTTGAATCGACGGAATCTGTTCTCGAATTACGGCAGAGGCATGACATAGCTGTTGGAACTGCGAAAGGATTACGATTTCTGCACGAAGAGTGTCGTGGAGGACCTATAATACATTGCGACGTGAGACCGAGCAATATACTTCTCACACACAACTTATTAGGTGATTTCGGCCTGGCCAAATGGAAGGTCAGAGAGGATCATCACGATTCGAGGATACTTGGGACATTAGGATATCTGGCTCCAGAATACGCGGCGAATGGTATTCTCTCAGTTCGGACAGATGTCTATGCATTTGGCATTGTGTTGTTGCAGCTAATATCAGGACGGAGAGTGGCCGATGCAAAAGGAGAAGACAAGCATTGTTCTTTACGGGAGTGGGCAGAGCCGTTGATTGAGAACCTAGAATTGCATGAATTGGTAGATCCACGGCTCGGAAAGACATACGGAACGTACCAATTATATCTCATGGCTAAAGCCGCGTCTTTATGTGTTAAGAGAAACCCGGACAACCGTCCTTCCATGGGAGAGGTAAGTATCGCAATAGATGATCGAAATATTCTAAACGACATTCCTTCGAATGTCAAATTCAGACTAAATTCGATTTGTTGTATAATTTGTGTCTTAAAGTTGAATTATTTCTTCAGGTAG 3531 41.43 MYVHFGPVGDAWKVFEDIREKNTISRNILLKGLLRFDHIERACILFDEMPQRDVVSWNSMISGLNSCGFNEYAVSCFMEMQIAGFRPSGYTYSILVSIARCTRQGKEIHGSIIRTGMILPNIVLGNSLIDMYGGFGLIDYAFNVFYTMKDVDIITWNSLILSCHRSGLDELALEQFCLMRYTEHSPDQFTFSTVISVCSWLQNLEMGKQIFVFCFKLGCFCNSIVLSSTIDMFSKCNSLVDAVRLFDELNKWDLAICNSMISSYARHGFSHDGLRIFVSALRHNLRPSEFTLSSVLGCVSVLMPTELCMQIHSFVVKLGFEYDPIVANSLVDIYAKVGLIGSAIDLFKNMEVKDLISWNTFLMGLSTNGREYEVVQIFKEAAGKGLRVDSITLAVVLLACNYGGFVDEGLTIFSSVEKDYGIVPADEHYACIVNLLGRAGKLEEAMDIISKMPYLPSSTIWRSLLCACTVDGDLKIIESVAERVMEMDPRSDLPHVVLARAYQTRGMWERMIRAIYAVRHKSSEKSSGSSWVVMKNIVCVFKDSQLQASMAHSHSPFYVVVAYDATRDQTENDLKLTVNAIRMVGDILRRGATLIILGVLHKVPHPMGYQLKACLDSFAGTRFQAIEEKVGEKVDEYVTLLLETAEKCDIEGVKVQVRITAGYPIRQVVLQEVMACNAKWVILDRHLRWDLKFYHKWIPCKIGLIQNSWSVEIVRSYVTSEAETIEQKVVYSMSKQVSSSNSNTSINEQTSISYDSFSNSNTSINEQTSISCNSFSLNSSSLDSINDISSASWKLEDPMILNSSSKKEKSGSPSSKGESWHSTAPQTGRSHSKDVSKQRASKAPILCSACETMNELSFKDSMKFNYTDIKLATSNFAKENLLGEGGFGRVFKGELKDRQLIAAKVRKEASSQGLAQFQSEVLILSYARHKNIVMLLGYCCKENLNILVYEYICNKSLNWHLFESTESVLELRQRHDIAVGTAKGLRFLHEECRGGPIIHCDVRPSNILLTHNLLGDFGLAKWKVREDHHDSRILGTLGYLAPEYAANGILSVRTDVYAFGIVLLQLISGRRVADAKGEDKHCSLREWAEPLIENLELHELVDPRLGKTYGTYQLYLMAKAASLCVKRNPDNRPSMGEVSIAIDDRNILNDIPSNVKFRLNSICCIICVLKLNYFFR 1176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8255810 8263052 - Bma001101.1 Bma01g00880 75397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00880 1176 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Bma01g00880 1176 Gene3D Tetratricopeptide repeat domain 402 558 IPR011990 GO:0005515
Bma01g00880 1176 ProSitePatterns Protein kinases ATP-binding region signature. 882 904 IPR017441 GO:0005524
Bma01g00880 1176 ProSitePatterns Tyrosine protein kinases specific active-site signature. 997 1009 IPR008266 GO:0004672|GO:0006468
Bma01g00880 1176 Pfam PPR repeat family 52 96 IPR002885 -
Bma01g00880 1176 Gene3D Tetratricopeptide repeat domain 162 303 IPR011990 GO:0005515
Bma01g00880 1176 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Bma01g00880 1176 SUPERFAMILY Protein kinase-like (PK-like) 861 1140 IPR011009 -
Bma01g00880 1176 PANTHER RECEPTOR-LIKE KINASE 556 1145 - -
Bma01g00880 1176 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Bma01g00880 1176 Pfam Protein kinase domain 877 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00880 1176 TIGRFAM PPR: pentatricopeptide repeat domain 256 288 IPR002885 -
Bma01g00880 1176 Gene3D Transferase(Phosphotransferase) domain 1 953 1153 - -
Bma01g00880 1176 Gene3D Phosphorylase Kinase; domain 1 838 951 - -
Bma01g00880 1176 Pfam PPR repeat 356 385 IPR002885 -
Bma01g00880 1176 Pfam PPR repeat 429 452 IPR002885 -
Bma01g00880 1176 Pfam PPR repeat 328 353 IPR002885 -
Bma01g00880 1176 Pfam PPR repeat 154 180 IPR002885 -
Bma01g00880 1176 Pfam PPR repeat 126 150 IPR002885 -
Bma01g00880 1176 Pfam PPR repeat 257 279 IPR002885 -
Bma01g00880 1176 Gene3D Tetratricopeptide repeat domain 1 111 IPR011990 GO:0005515
Bma01g00880 1176 Gene3D Tetratricopeptide repeat domain 304 401 IPR011990 GO:0005515
Bma01g00880 1176 MobiDBLite consensus disorder prediction 802 839 - -
Bma01g00880 1176 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 53 87 IPR002885 -
Bma01g00880 1176 PANTHER OS01G0253100 PROTEIN 556 1145 IPR045271 GO:0004714|GO:0006468
Bma01g00880 1176 ProSiteProfiles Protein kinase domain profile. 876 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00880 1176 MobiDBLite consensus disorder prediction 802 831 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00880 - - - qsu:111984994 676.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00880 Bma-Chr1:8255810 Bma10g00758 Bma-Chr10:12142001 1.84E-91 dispersed
Bma12g00212 Bma-Chr12:2772012 Bma01g00880 Bma-Chr1:8255810 6.29E-09 dispersed
Bma01g00880 Bma-Chr1:8255810 Bma13g01236 Bma-Chr13:45626188 5.60E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66268 PF00069 Pkinase 1.40E-34 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00880 Bma_Chr01 FPKM 14.875408 14.998276 3.266535 3.799613 6.175097 8.608206 7.598772 5.654681 6.227085 4.606926