Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00881 ATGGCCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCGAGGAAAGCCACTTTCAAGAAGAGAAAGAAGGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCCGTGATTTACAGTCCGTTCGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGGACTGCCGGAAATGGATCAGAGCAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTGAAGAAGCTGATGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTAATGTTTGACTGCCTCACCGGAAACTCTCTCCAGGGTTTAACGATGCTGGATTTGCGGGATTTAGGCTGGGTGGTTGATCAGCATTTGAACGATATTGGCCGGAGAGACGATTTCCTGACCAAACCAGTGGCTCAAAATGAAAACCAAGTCCTGGCTGCATTGCCGCCGCCACTGATGGAAGGTGGGGAAGAAATAATGCAGCGATGTGGAGGTCAAAATATGGAGACAATGAAAGGAATGCCGAGATCGCAGCCATGGAATCCGGAGACGATGAACTCGAGTCAGGATCATGATCAAACGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGCCCCGTTTGGTCTCCATTGTCGCCATGA 729 49.52 MARKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAVIYSPFETLPEAWPSPGGVQRVLSRFRGLPEMDQSRKMVNLESFIRQRIAKANEQLKKLMKENREKEMTRVMFDCLTGNSLQGLTMLDLRDLGWVVDQHLNDIGRRDDFLTKPVAQNENQVLAALPPPLMEGGEEIMQRCGGQNMETMKGMPRSQPWNPETMNSSQDHDQTMGFNVDDMILPFEDANNSPVWSPLSP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8264151 8264967 - Bma001102.1 Bma01g00881 75398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00881 242 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Bma01g00881 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bma01g00881 242 PANTHER MADS BOX PROTEIN 2 165 - -
Bma01g00881 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 165 - -
Bma01g00881 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bma01g00881 242 Coils Coil 87 114 - -
Bma01g00881 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00881 - - - zju:107411686 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00881 Bma-Chr1:8264151 Bma15g00363 Bma-Chr15:3835191 1.16E-68 dispersed
Bma01g00881 Bma-Chr1:8264151 Bma02g00290 Bma-Chr2:3336861 2.63E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56686 PF00319 SRF-TF 4.90E-18 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00881 Bma_Chr01 FPKM 24.014248 26.652315 33.611927 31.43577 62.253216 56.265903 64.703842 24.08506 24.049498 29.273085