Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00881 ATGGCCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCGAGGAAAGCCACTTTCAAGAAGAGAAAGAAGGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCCGTGATTTACAGTCCGTTCGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGGACTGCCGGAAATGGATCAGAGCAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTGAAGAAGCTGATGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTAATGTTTGACTGCCTCACCGGAAACTCTCTCCAGGGTTTAACGATGCTGGATTTGCGGGATTTAGGCTGGGTGGTTGATCAGCATTTGAACGATATTGGCCGGAGAGACGATTTCCTGACCAAACCAGTGGCTCAAAATGAAAACCAAGTCCTGGCTGCATTGCCGCCGCCACTGATGGAAGGTGGGGAAGAAATAATGCAGCGATGTGGAGGTCAAAATATGGAGACAATGAAAGGAATGCCGAGATCGCAGCCATGGAATCCGGAGACGATGAACTCGAGTCAGGATCATGATCAAACGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGCCCCGTTTGGTCTCCATTGTCGCCATGA 729 49.52 MARKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAVIYSPFETLPEAWPSPGGVQRVLSRFRGLPEMDQSRKMVNLESFIRQRIAKANEQLKKLMKENREKEMTRVMFDCLTGNSLQGLTMLDLRDLGWVVDQHLNDIGRRDDFLTKPVAQNENQVLAALPPPLMEGGEEIMQRCGGQNMETMKGMPRSQPWNPETMNSSQDHDQTMGFNVDDMILPFEDANNSPVWSPLSP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8264151 8264967 - Bma001102.1 Bma01g00881 75398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00881 242 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Bma01g00881 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bma01g00881 242 PANTHER MADS BOX PROTEIN 2 165 - -
Bma01g00881 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 165 - -
Bma01g00881 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma01g00881 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bma01g00881 242 Coils Coil 87 114 - -
Bma01g00881 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00881 Bma-Chr1:8264151 Bma15g00363 Bma-Chr15:3835191 1.16E-68 dispersed
Bma01g00881 Bma-Chr1:8264151 Bma02g00290 Bma-Chr2:3336861 2.63E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56686 PF00319 SRF-TF 4.90E-18 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00881 - - zju:107411686 253.447