Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00901 ATGAAGAATGCGAAGGTGGAAGCTATAATCGGACCAGTGAGTTCGCAGCAGGCTAACTTCTTGATTGAACTCGGAGATAAAGCACAGGTTCCCATTATTTCATTTTCGGCAACGAGTTCTTTGCTAACATCTCTCGGCAGTTCGTATTTTTTCCGCATCGCGCAAAATGACTCGTCTCAAGTTCAACCCATTTGTTCAATTCTCAAAGCTTTTGGGTGGAGAGAGGTCGTGCCTATCTACGTAGATAATGCATTTGGGCAAGGAATTATACCCTACTTCGTTGATGCATTGCAGGAAATAGGCACTCACGTGCCTTACAGAAGTGCCATTCCTTCTTCAGCCTCTGATGATCAAATTGCAGCAGAGCTGTACAAGCTGATGAGCATGCAAACTAGGGTTTTTGTTCTCCATCTCCTACCTAGTCTGGCTTCCAAGATTTTCAAAATGGCGAAAGATATAGGGATGATGAGCGAAGGCTATGTTTGGATCATGACCGATTCGATCACTAATCTTTTGACTCAAATAGACGAGTCCGATTTCGACTCGATGCAAGGGGTGTTGGGCATTAAGACTTACATTCCGAGATCGACCGAGCTAGATGATTTCAAAGTGAGATGGACAAACAAGTTTCGGCAAGATAATCCCACCGATCTCAATGCTCAACTGAATGTTTTTGGGCTGTGGAGTTATGATGCAGCTTGGGCACTAGCCATGGCTGTCGAGGCAGCCCTTTCGACTTCAAACCTTGGCTATCAAAAATCCAATAGCTCAACCAATGGAACCGATCTGGACACTTTCGGGGTTTCTCTGAACGGCCCCAGAATTCGCGACCAGCTGTCCAAGATGACATTTACTGGACTTAGCGGGAATTTTAGCCTTGTCGACGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAATGGTCATATAGGGAGACCCATTGGATATTGGACACCCAAAACTGGTCTCTCAAAAAGTTTGGATTCATCTTCTTCGGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTTCAATTCCAAATGGATGGGAGATTCCAACAAATGGGAAGAAACTGAAAGTAGGAGTTCCTTACAAGGACGGATTCAGCGAATTTGTGAAAATAACAAATGCTTCCATCTCAAATGCTACAACCGTCACAGGCTACTGCATAGACATCTTCAATGCAGTTCTCGAAGAGTTACCTTACGCCATTGTTCCAGACTTCATTCCCTATAACCCCCCTAATTATACCTACGATGATTTGATCAAGCAAGTCAAACTCGGGGTGGGTATTCTTTCGTTTATTTGTTTCACACTATCTTGTTGA 1344 43.9 MKNAKVEAIIGPVSSQQANFLIELGDKAQVPIISFSATSSLLTSLGSSYFFRIAQNDSSQVQPICSILKAFGWREVVPIYVDNAFGQGIIPYFVDALQEIGTHVPYRSAIPSSASDDQIAAELYKLMSMQTRVFVLHLLPSLASKIFKMAKDIGMMSEGYVWIMTDSITNLLTQIDESDFDSMQGVLGIKTYIPRSTELDDFKVRWTNKFRQDNPTDLNAQLNVFGLWSYDAAWALAMAVEAALSTSNLGYQKSNSSTNGTDLDTFGVSLNGPRIRDQLSKMTFTGLSGNFSLVDGQLQSTTFEIVNINGHIGRPIGYWTPKTGLSKSLDSSSSAGATLGTILWPGDSTSIPNGWEIPTNGKKLKVGVPYKDGFSEFVKITNASISNATTVTGYCIDIFNAVLEELPYAIVPDFIPYNPPNYTYDDLIKQVKLGVGILSFICFTLSC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8575762 8577105 - Bma001129.1 Bma01g00901 75418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00901 447 CDD PBP1_GABAb_receptor_plant 1 324 IPR044440 -
Bma01g00901 447 Gene3D - 260 362 - -
Bma01g00901 447 Gene3D - 363 440 - -
Bma01g00901 447 PANTHER OS06G0188250 PROTEIN 1 435 - -
Bma01g00901 447 Pfam Receptor family ligand binding region 3 310 IPR001828 -
Bma01g00901 447 PANTHER OS06G0188250 PROTEIN 1 435 - -
Bma01g00901 447 Gene3D - 58 221 - -
Bma01g00901 447 SUPERFAMILY Periplasmic binding protein-like I 3 346 IPR028082 -
Bma01g00901 447 SUPERFAMILY Periplasmic binding protein-like II 337 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00901 Bma-Chr1:8575762 Bma10g00751 Bma-Chr10:11972624 2.78E-162 dispersed
Bma01g00901 Bma-Chr1:8575762 Bma02g00328 Bma-Chr2:4485146 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00901 K05387 - qsu:111995184 511.146