Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00903 ATTGGGAGCGAATCGAAAGATATGGAATCCGAGGATGCAGTGAAGAGTAAATTGGAGGAATTGCAGAAAGATTTGGGCAGGAAGCTGAAATTAGAAGGTGCTATCGCTTCCCTCTTTTCTCTGTTTCGAGATCGATATCCATCCGCTTCTCCATCTCTCCGAAAATCGTTATATTCTGCGGTATGCCGAGCTGCAACTGTTCTGAAAACGAGATATACATCCCCTGGTTTTTGGATCGCGGGGCTAGGGCTTTTTGAGGTGGCGCATTCTATGGTTTCTGATTCTTCTGAGAAGCAGTATTTGAAGAATTGTGTTGCCCAAGCTAAGGAAATTTTGAATCAAGTAGAAAACCCCTCTCAATCGCATGAAAATACGCCGCCGAATAGAGGATATCTTTTTGAAGGACACCTGACTGTGGATCCAGAGCCCCCTCAGCCTCAGTGGTTGGTGCAATCAAATCTATTGACTACTGCGGCTACTCTTTTTGAAGCTGAATCTTCTCGAGTTCCATCTGAAAACAATGAGCTATCTGAAACAACTGCCAATGTTATTCAAGCACTCATTGACAACTTAGATAATATATTGGAGAACGATCATATGGCCCCAAGAGCTCCCCCTGCGAGTAAAGAAGTAGTTGCAAACCTTCCTGTCATTACCATTACAGATGACATCCTTTCCAAGCTAGGAAAAGATGCAGAGTGTGCTATTTGTAAAGATGATTTAGCTGTTAAAGACAAGATGCAAGAGTTGCCTTGCAAGCATACATTTCATCCTCCATGTCTAAAGCCATGGCTGGATGAGCATAATTCTTGTCCAATCTGTCGTCATGAGTTGCTAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGGGAAAAGGAGGCAGAAGAAGAGAGGAAAGGAGCTGCGAATGCCATTAGAGGTGGTGAATACATGTATGTTTAG 945 43.49 IGSESKDMESEDAVKSKLEELQKDLGRKLKLEGAIASLFSLFRDRYPSASPSLRKSLYSAVCRAATVLKTRYTSPGFWIAGLGLFEVAHSMVSDSSEKQYLKNCVAQAKEILNQVENPSQSHENTPPNRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFEAESSRVPSENNELSETTANVIQALIDNLDNILENDHMAPRAPPASKEVVANLPVITITDDILSKLGKDAECAICKDDLAVKDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELLTDDHAYESWKEREKEAEEERKGAANAIRGGEYMYV 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8725143 8726943 + Bma001132.1 Bma01g00903 75420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00903 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 308 - -
Bma01g00903 314 SMART ring_2 234 274 IPR001841 -
Bma01g00903 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Bma01g00903 314 PANTHER ABI3-INTERACTING PROTEIN 2-1 10 308 - -
Bma01g00903 314 Coils Coil 285 305 - -
Bma01g00903 314 CDD RING-H2_RNF126_like 233 275 - -
Bma01g00903 314 Pfam Ring finger domain 233 275 IPR001841 -
Bma01g00903 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 280 IPR013083 -
Bma01g00903 314 SUPERFAMILY RING/U-box 228 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00903 Bma-Chr1:8725143 Bma12g01260 Bma-Chr12:45646726 1.82E-24 dispersed
Bma12g01164 Bma-Chr12:44174649 Bma01g00903 Bma-Chr1:8725143 1.11E-08 dispersed
Bma01g00903 Bma-Chr1:8725143 Bma11g00345 Bma-Chr11:3389968 2.86E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00903 K16274 - gmx:100800189 436.802