Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00904 ATGGAAACTGGTTCTGGGAAGACCATGATTGCTGTGATGCTCATAAGAGAAATTGGCCTAGCCACTAAGTCGAGTGGTAAAAGAAAACTGTTGATTTTATTAGCACCAACTGTTCATCTCGTTCATCAGGTATGTGGTCTTATGTATATTTCCTCAGACTGTGTGGTTTTGGGTTTGCAGCAATTTAAGGTCATCAAAATTCATACGAATTTTGAAGTGGGGGAGTACTATGGAGCCAAAGGGGTTGATGAATGGCGTGCAGAGTGCTGGGACAAGGAAATAAATGAGCACGATGTGCTGGTTATGACTCCCCAAATTCTTTTAGATGCATTAAGAAAGGCGTTTTTGAGCTTAGAGAAAGTGTGCTTGATGATTATTGACGAATGCCATCGCGCTAGTGGTAATCATCCCTATACAAAAATCATGAAGGAATTTTATTACAAATCCAAGGACAAACCAAAGATATTTGGAATGACTGCATCTCCTGTTGTAAGGAAGGGTGTCTCCTCTTCTATGGATTGTGAGAATCAAATATCAGATCTTGAAAGTATCTTGGATTCACAGATTTATACAGTCGAAAATAAGAAAGAGCTGGAAGTTTATGTTCCCTCTGCAAGAGAAACTTATATCTTTTATGAACAAGCAGAGTCCAGAAGCTTGGATCTGAAAGCTGGTATTGAAGCCTTATGGTTCAAGAATGATGCTTCGCTATCAATGTTGCACGATGTAGTTCGAAGTCGTTACAAGGACTTGGATGATAAGTTTAAGACATTGAGAAAGCGGCTTTCTAATGATCATTCTACAATATTGTATTGTCTTCATGAACTAGGAGTCGTATGTGCGTATGAGGCTGTTCAAATGTGTCTGCAGGGTTCTCGTACTGCTGTAGAGGAGTGTGAAATTTATTGTCTAAGTTTGGCATTGTATAAAGATTATCTCGAGGAAGTGTCGAGTATAATTGGGGAATCTTATGCTCTTGGGAACGAAAGTGTATTGTCTTTTAGGAATGACTATTCAGTGGATTCAAGATACATATCTCCAAAATTATTTGCGCTTTTGCAACTTTTCAAATCCTTTGGAGAGGCTAGGCAGGTGCTTTGCCTTATTTTTGTCGAAAGAATTGTTGCAGCTAGAGTTATCAAACAATTTGTAACGAAAGTTACTGATTTATCACATTTTACAAGTTCTTATTTGACTGGATGTAATGCGTCAACTGGCGCACTTCCTTCAAAAATGCAAGAGACATTGGAATCATTTTGTTATGGGAAGGTTAATCTATTATTTGCTACTGATGTTGTTGAGGAGGGAATCCACATACCACAATGTTCCTGTGTTGTTCGATTCGACCTGCCTAAGACGGTTCGTAGTTATGTGCAATCTCGAGGACGGGCTCGACAAGATAACTCTCAATATGTCCTTATGTTGGAGAGAGGAAATATGAAACATAGAGATCAACTATTTGATCTTATTAAAAGTGAGCACTCTATGATGGATGCAGCTATGAGTAGGGATCAGGACACATGGAATTTGAAACCATGTTCTCCTGAGGTGAAAAATGTGTATGTTGTGGAAGCAAGTGGAGCATCAGTTACTGCAGATTCTAGTGTCAGTCTTATACATCAATATTGTGAAAAGCTCCCTGGTGATAAGTATTTCACACCGAAGCCAATCTTCCAGATTTCGGATGTTGGAGGATCTTATGAGTGTAAACTGACCCTGCCTCCAAATGCACCTTTTCAGACTATAGTTGGTCCGTCTTGTAGGAGTTCTCATTTGTCTAAGCAGCTTGCGTGCTTGGAGGCATGTAAGAGACTGCATGAAGTGGGTGGGCTGGATGATCATTTCCTCCCCTGCACGGGAGACTCTTCAAAGTTTGATGTAATTGAAAAAACTACTAAACTGAGTGGTGCAGGTACAAAAAAAAGAAAGGAACTGCATGGAACAACTCAAATTCATGCATTGTCCGGAACGTGGGGAGAAAATCTTGATGGTGTCGTTTTTCATGCCTACAAATTTTCGTTCTCCTGTAATGTTGTTGGCGAGTTTTATTCTGAGTTTGTACTTCTCCTGCAATCAAAGCTTGATGATGATGTGGGAAATATTGAACTGGAACTTTACTTAGTCTCAAAAATAGTCAAGGCTTCTGTTTTATCCTGTGGAGAATTTCATATGAGTGCAGAGCAGATAATTAAATCAAAGGCCTTTCAAGAAATATTTTTTACTGGAATGTTTGGAAGATTGTTTGCTGGATCAAAAACAGCTGGGACGCAAAGAGAATTTTTACTCCAGAAAGAAGCACAATCTCTTTGGCAACCATATAATTTGTATTTCCTTTTACCGCTGCAACGACTGAATGTGGCAAATGTGGATTCATGGGAAATAGATTGGACTGGTATCAGTTCTTGTGCTTCTATAACAGAATTTTTTATGAAAAACTCTTCATTAGGAACTGATAATTTCTGTGGCGGGAAAGTGGAAAATTCAGACTTGAACGAGAAAGATTGCAGTGTGTCCAGTGTAATATCTTTTGCTAATTGTAATGTTGCTATAGAAGGCCTGAAAGATTTTGTAGTATTGGCTATTCACACTGGAAGGATATATTCAATTGTGGAAGCTGTAAGAGGCACATCTGCGGAGAGCACTTTTGATGGAAAGCTAGATGGTACACCATCTGAATACACTACCTTTTCTGATTACTTCAACAAAAAGTATGGAATTGTGTTGAAATATCCGAAACAGCCACTGCTGCGGTTAAAGCAAAGCCATAATCCGCATAATCTTCTTGTCAACTTCAATGATATAGGTGACGAGACATTGAAATCTGAGATGGTTCCCAGAAAGCCACAGACGCATGTGAACATGCCACCAGAGCTTTTGTTCAGGATTGATATTCCAAGAGAAGTTTTAAAGTCATCATATTTACTTCCATCTTTGATGCATCGTTTAGAGTCCCTGATGTTATCTAGCCAGCTAAGGAAGGAGATTGGTGGTCATGCAAGTAGCTTTAAAATATCAAGCCATTTGATTTTAGAAGCACTTACAACACTTAGATGTTGTGAAAGTTTTTCTATGGAGCGTTTGGAATTGCTTGGTGACTCCGTTTTGAAGTATGCTGTTAGCTGCCACCTCTATCTCAAACATTTAAACAAACATGAGGGACAGTTATCCGGCCTGCGGCAATTGGCTGTCTGCAATGCAAATTTACATAAATTGGGAACAAGACGTAATTTGCAGGGACATATACGTGATAGTCCATTTGATCCACGTCGCTGGTGTGCACCTGGACAGCGTCGTACTCGTCACGTTCCTTGTAAGTGTGAAGTTGATACTTTAGAAGTGCCTTTAGACTCCAAATTCCAAGTTGAAGACCCAAAACTTGTGTTGGGAATATGCTGTGACAAGGGTCACAAATGGATGATTTCAAAAACTATAGCTGATTGTGTTGAATCTCTCATTGGTGCTTATTATATTGATGGGGGGCTGATTGCTGCATTACATGTGATGAAGTGGTTTGGTATAGATGCTGAACTTGATCCCCCATTATTATTTGATGCTATTGCAACTGCTACCCTGAGGTCATACATTCCAAAAATGGATGATATTGCAACCTTAGAATCAAAGATTGGATACCAGTTTGTTACCAAAGGGCTTTTGCTCGAGGCTATAACTCATGGGACTGGAGAAGAGCAAAGTCTTGGTTACTGTTACCAGAGGCTTGAGTTTCTTGGTGATTCAGTGTTGGACCTGCTTATTACTAGGCATCTTTTTCATAACCATACCGAAATTGACCCTGGTGAAATGACAGACTTGCGCTCAGCTTCTGTTAGTAATGAAAATTTTGCTCAAGTGGCTGTGAGACATAATTTTCACCCTCATCTTCAACATTGCTCCTCGTTGCTCCTAAGCCAAATAACAGAATATGTTACACATTTAGCTGAATCTCATGGTGGTGCGAGAACTCTCCATGGAACCAAGGTCCCTAAGGTTCTTGGAGATTTGGTAGAAAGTGTTGCAGGGGCAATATTGATTGATACTAAGCTCAATCTTGACGAAGTGTGGAGAATATATGAACCACTTTTGTCACCCATTGAGACCCCTGATAAACTTGAACTGCCACCTCTGCGCAAGTTGCACCAGTTATGTGACTCCCTCGGGTATTTTGTGAATGAAAAATGCACAAGAAAGGGAGAATTCGTGCGTGCTGAGCTTAGGTTACAGCTAAACGATATCCTCTTGATCGGAGAGGGATATGAACGTAGCAGAAAAGTTGCCAAAGGACGAGCAGCTTCATATCTCTTGGATGAACTTACGAAGAGGGGAATTTCATTCTCTTATGGTTCCAAGAAGAGAAAGATTTACGAAGATGTTGACGATCTGCCTTGCCAAGATACGAAGGATGATATCTCTGGCCAAAAAGCTAATGGTGTCTCTTTAGAGCTTAATGGCCAGGAGAACCACACGATGACCGAAGCTCAACTGCCTGCACAGGCAACTGCAATTTCTTGCAATGGAGAATCATCTTGTAGTCTCCCAGCTGTAGCAATTAACATGAAAAAAGGAGGACCTCGAAACTCTCTCTTTAAGCTATGTAGGAGCCTGGATTGGCCAATGCCAACGTTCAAATCATCAGAACATAGATCAAGGACTCCAATTGAATTTGATGAAGGTTCTGAAAAAAGAAAGGTATATAATAGTTTCCGGTCGAATGTGATCTTGCACATACCCAACTCTGGTAGCATTGAATGTGAAGGAGATGCTAAAGCAGACAAGAAGAGTTCACTCGATTCAGCTGCCATAGCCTTGCTTTACAAGCTTCATCGCCAGGGAAAAGTCATCGTCGGCGATCCCTGA 4851 40.34 METGSGKTMIAVMLIREIGLATKSSGKRKLLILLAPTVHLVHQVCGLMYISSDCVVLGLQQFKVIKIHTNFEVGEYYGAKGVDEWRAECWDKEINEHDVLVMTPQILLDALRKAFLSLEKVCLMIIDECHRASGNHPYTKIMKEFYYKSKDKPKIFGMTASPVVRKGVSSSMDCENQISDLESILDSQIYTVENKKELEVYVPSARETYIFYEQAESRSLDLKAGIEALWFKNDASLSMLHDVVRSRYKDLDDKFKTLRKRLSNDHSTILYCLHELGVVCAYEAVQMCLQGSRTAVEECEIYCLSLALYKDYLEEVSSIIGESYALGNESVLSFRNDYSVDSRYISPKLFALLQLFKSFGEARQVLCLIFVERIVAARVIKQFVTKVTDLSHFTSSYLTGCNASTGALPSKMQETLESFCYGKVNLLFATDVVEEGIHIPQCSCVVRFDLPKTVRSYVQSRGRARQDNSQYVLMLERGNMKHRDQLFDLIKSEHSMMDAAMSRDQDTWNLKPCSPEVKNVYVVEASGASVTADSSVSLIHQYCEKLPGDKYFTPKPIFQISDVGGSYECKLTLPPNAPFQTIVGPSCRSSHLSKQLACLEACKRLHEVGGLDDHFLPCTGDSSKFDVIEKTTKLSGAGTKKRKELHGTTQIHALSGTWGENLDGVVFHAYKFSFSCNVVGEFYSEFVLLLQSKLDDDVGNIELELYLVSKIVKASVLSCGEFHMSAEQIIKSKAFQEIFFTGMFGRLFAGSKTAGTQREFLLQKEAQSLWQPYNLYFLLPLQRLNVANVDSWEIDWTGISSCASITEFFMKNSSLGTDNFCGGKVENSDLNEKDCSVSSVISFANCNVAIEGLKDFVVLAIHTGRIYSIVEAVRGTSAESTFDGKLDGTPSEYTTFSDYFNKKYGIVLKYPKQPLLRLKQSHNPHNLLVNFNDIGDETLKSEMVPRKPQTHVNMPPELLFRIDIPREVLKSSYLLPSLMHRLESLMLSSQLRKEIGGHASSFKISSHLILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLYLKHLNKHEGQLSGLRQLAVCNANLHKLGTRRNLQGHIRDSPFDPRRWCAPGQRRTRHVPCKCEVDTLEVPLDSKFQVEDPKLVLGICCDKGHKWMISKTIADCVESLIGAYYIDGGLIAALHVMKWFGIDAELDPPLLFDAIATATLRSYIPKMDDIATLESKIGYQFVTKGLLLEAITHGTGEEQSLGYCYQRLEFLGDSVLDLLITRHLFHNHTEIDPGEMTDLRSASVSNENFAQVAVRHNFHPHLQHCSSLLLSQITEYVTHLAESHGGARTLHGTKVPKVLGDLVESVAGAILIDTKLNLDEVWRIYEPLLSPIETPDKLELPPLRKLHQLCDSLGYFVNEKCTRKGEFVRAELRLQLNDILLIGEGYERSRKVAKGRAASYLLDELTKRGISFSYGSKKRKIYEDVDDLPCQDTKDDISGQKANGVSLELNGQENHTMTEAQLPAQATAISCNGESSCSLPAVAINMKKGGPRNSLFKLCRSLDWPMPTFKSSEHRSRTPIEFDEGSEKRKVYNSFRSNVILHIPNSGSIECEGDAKADKKSSLDSAAIALLYKLHRQGKVIVGDP 1616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8753091 8778320 - Bma001133.3 Bma01g00904 75421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00904 1616 CDD RIBOc 1217 1367 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 SMART ultradead3 1 198 IPR014001 -
Bma01g00904 1616 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 1 1611 - -
Bma01g00904 1616 CDD RIBOc 1008 1180 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 SUPERFAMILY RNase III domain-like 1199 1364 IPR036389 GO:0004525|GO:0006396
Bma01g00904 1616 CDD DEXHc_dicer 1 193 - -
Bma01g00904 1616 ProSiteProfiles PAZ domain profile. 851 963 IPR003100 GO:0005515
Bma01g00904 1616 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 535 625 IPR005034 GO:0016891
Bma01g00904 1616 Gene3D Ribonuclease III domain 1192 1365 IPR036389 GO:0004525|GO:0006396
Bma01g00904 1616 Gene3D Ribonuclease III domain 988 1171 IPR036389 GO:0004525|GO:0006396
Bma01g00904 1616 ProSiteProfiles Ribonuclease III family domain profile. 1201 1346 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 SMART helicmild6 373 467 IPR001650 -
Bma01g00904 1616 Pfam Dicer dimerisation domain 535 619 - -
Bma01g00904 1616 Gene3D - 1528 1607 - -
Bma01g00904 1616 ProSiteProfiles Ribonuclease III family domain profile. 988 1160 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 Pfam Type III restriction enzyme, res subunit 1 162 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bma01g00904 1616 Gene3D - 338 504 IPR027417 -
Bma01g00904 1616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 505 IPR001650 -
Bma01g00904 1616 SUPERFAMILY RNase III domain-like 987 1184 IPR036389 GO:0004525|GO:0006396
Bma01g00904 1616 SMART riboneu5 1216 1369 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 SMART riboneu5 1007 1180 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 Pfam PAZ domain 851 984 IPR003100 GO:0005515
Bma01g00904 1616 Gene3D - 1 224 IPR027417 -
Bma01g00904 1616 PANTHER DICER-RELATED 1 1611 - -
Bma01g00904 1616 SMART PAZ_2_a_3 825 987 IPR003100 GO:0005515
Bma01g00904 1616 Pfam Ribonuclease III domain 1237 1345 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 Pfam Ribonuclease III domain 1025 1160 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 Pfam Helicase conserved C-terminal domain 361 464 IPR001650 -
Bma01g00904 1616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 180 IPR014001 -
Bma01g00904 1616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 480 IPR027417 -
Bma01g00904 1616 Gene3D paz domain 839 960 - -
Bma01g00904 1616 CDD SF2_C_dicer 344 475 - -
Bma01g00904 1616 Gene3D Dicer dimerisation domain 530 627 IPR038248 -
Bma01g00904 1616 ProSitePatterns Ribonuclease III family signature. 1237 1245 IPR000999 GO:0004525|GO:0006396
Bma01g00904 1616 SUPERFAMILY PAZ domain 850 959 IPR036085 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00904 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - jre:108996299 2029.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00904 Bma-Chr1:8753091 Bma11g00628 Bma-Chr11:9926862 0 dispersed
Bma01g00904 Bma-Chr1:8753091 Bma12g00178 Bma-Chr12:2403527 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38