Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00907 ATGATACCTTCATTTCTCAGCGTAGTGTCTCTCTACAGCCGCTACCTTTCTCGCTGCTTCACTTCTGCTGGTCTTATTCGACAGACAGTCGACATCGACGATGAAACGACGATGGCCTTTTGGGGTCCCAAACCCAACCCTAAACGAACCGAGGAAAAAACTCCTCTCATCTTGATTCATGGCTTCGGTCCTATGTCGATCTTTCAATGGCGGAATCAAGTAGAGTTCTTCGCGCCTGAATTCGACGTCTATGTTCCTGATCTCGTCTTCTTCGGCGACTCCACTACCAGGTCATCGGAGAGAACAGAACTTTTTCAGGCCGTTTCTGTCGGAAAGCTAGTAGAAAAGCTCGGATTGAAGAAATTTCACATGATGGGCACTAGCTATGGTGGAATTATCACGTACCATGTGGCGAGGTTGTTGCCGGAGAGAGTGGAGAAGGTGATAATCGCCAGCTCAGCAATCAACAGAAGAAGGAAAGATATCGAGGCGTTACTCAAGAGAGCAAAAGTGGAGAGAATTGAGGATCTAATGCTACCATCGACGGCGAAGGAGTTACGCCGGCTAATGGCGTTTGCTGCGTATAATCGCACGCTTGGAATGATCCCGGATTTCGTCTTCAACGACTTCTTAAACACGTTTTACTCGAAGAACAGGGAGGAGAAATTGGAGCTAATTAAGGGGCTGACGGTCGGAAGAGATGATACTGTGAATATTTCTCCTCTTCATCAGGAGGTTTTGATTATAATGGGAGAGCACGACCTTCTCTACCCGTTGGAGATAGCTACTGAGCTCACACAGATTATTGGAGAAAAAGTCAAACTAGAGGTGATTAAAAAGTCAGCTCACATTCCCCAGATTGAATCCCCAAAACAATTCAACTCCATTGTCCAAACCTTTCTCCGTGGCTCCTGA 915 46.56 MIPSFLSVVSLYSRYLSRCFTSAGLIRQTVDIDDETTMAFWGPKPNPKRTEEKTPLILIHGFGPMSIFQWRNQVEFFAPEFDVYVPDLVFFGDSTTRSSERTELFQAVSVGKLVEKLGLKKFHMMGTSYGGIITYHVARLLPERVEKVIIASSAINRRRKDIEALLKRAKVERIEDLMLPSTAKELRRLMAFAAYNRTLGMIPDFVFNDFLNTFYSKNREEKLELIKGLTVGRDDTVNISPLHQEVLIIMGEHDLLYPLEIATELTQIIGEKVKLEVIKKSAHIPQIESPKQFNSIVQTFLRGS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8797058 8798334 + Bma001136.1 Bma01g00907 75424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00907 304 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 301 - -
Bma01g00907 304 Pfam alpha/beta hydrolase fold 55 153 IPR000073 -
Bma01g00907 304 PRINTS Epoxide hydrolase signature 138 151 IPR000639 GO:0003824
Bma01g00907 304 PRINTS Epoxide hydrolase signature 61 79 IPR000639 GO:0003824
Bma01g00907 304 PRINTS Epoxide hydrolase signature 124 137 IPR000639 GO:0003824
Bma01g00907 304 PRINTS Epoxide hydrolase signature 244 260 IPR000639 GO:0003824
Bma01g00907 304 PRINTS Epoxide hydrolase signature 278 300 IPR000639 GO:0003824
Bma01g00907 304 SUPERFAMILY alpha/beta-Hydrolases 28 302 IPR029058 -
Bma01g00907 304 PANTHER SI:DKEY-122A22.2 5 301 - -
Bma01g00907 304 Gene3D alpha/beta hydrolase 47 302 IPR029058 -
Bma01g00907 304 PRINTS Alpha/beta hydrolase fold signature 138 151 IPR000073 -
Bma01g00907 304 PRINTS Alpha/beta hydrolase fold signature 124 137 IPR000073 -
Bma01g00907 304 PRINTS Alpha/beta hydrolase fold signature 246 260 IPR000073 -
Bma01g00907 304 PRINTS Alpha/beta hydrolase fold signature 80 95 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00907 - - - csv:101211265 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00907 Bma-Chr1:8797058 Bma15g01050 Bma-Chr15:42209579 3.79E-46 dispersed
Bma01g00907 Bma-Chr1:8797058 Bma02g00142 Bma-Chr2:1256767 8.65E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g172 . . . . Bpe02g01564 . . . Cmo05g00422 . . Cma05g00410 . . Sed11g0859 . . Bhi04g01523 Tan02g1575 Cmetu03g2273 . Hepe08g1441 . Lcy13g2228 . . . . . . . . . . Cone20ag0294 Lsi04g02234 . . . Blo17g00271 Blo18g00258 Bda01g01351 . Bpe14g00283 . Bma01g00907 . . . . . . . Car05g00345 Cpe11g00350 . . . . . . . . Cla08g00981 Cam08g1430 Cec08g1008 Cco08g1131 Clacu08g1135 . Cre08g0919 . . Chy03g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009871 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00907 Bma_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.189815 0.090626 0.27255